Project name: query_structure

Status: done

Started: 2026-03-16 21:45:12
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Chain sequence(s) A: MLPAPKNLVVSRVTEDSARLSWTAPDAAFDSFPIRYIETLIWGEAIWLDVPGSERSYDLTGLKPGTEYVVVIDGVKGGDHSKPLVATFTT
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:41)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:41)
Show buried residues

Minimal score value
-3.0775
Maximal score value
2.8692
Average score
-0.6644
Total score value
-59.8003

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 M A 0.4265
2 L A -0.3640
3 P A -0.5563
4 A A -1.1943
5 P A 0.0000
6 K A -2.3142
7 N A -1.3878
8 L A 0.1205
9 V A 1.1019
10 V A 0.3015
11 S A -0.6225
12 R A -2.0177
13 V A -1.0492
14 T A -1.7981
15 E A -3.0775
16 D A -2.7863
17 S A -2.1148
18 A A 0.0000
19 R A -1.2252
20 L A 0.0000
21 S A -0.4379
22 W A 0.0000
23 T A -1.3633
24 A A -1.4624
25 P A -1.3996
26 D A -2.2963
27 A A -1.4034
28 A A 0.0000
29 F A 0.0000
30 D A -2.7319
31 S A -1.8905
32 F A 0.0000
33 P A -0.8989
34 I A 0.0000
35 R A 0.0068
36 Y A 0.4647
37 I A 0.5708
38 E A 0.4700
39 T A 1.2812
40 L A 2.5244
41 I A 2.8692
42 W A 2.0927
43 G A 0.8205
44 E A -0.9476
45 A A -0.0129
46 I A 0.9234
47 W A 0.9350
48 L A 0.0500
49 D A -1.4840
50 V A 0.0000
51 P A -1.5741
52 G A 0.0000
53 S A -1.6982
54 E A -1.9003
55 R A -1.2498
56 S A -0.7642
57 Y A -1.0029
58 D A -1.7510
59 L A 0.0000
60 T A -1.3882
61 G A -1.5217
62 L A 0.0000
63 K A -3.0193
64 P A -2.5812
65 G A -1.8102
66 T A -1.2890
67 E A -0.8475
68 Y A 0.0000
69 V A 0.3746
70 V A 0.0000
71 V A 0.0000
72 I A 0.0000
73 D A 0.0000
74 G A 0.0000
75 V A -2.2103
76 K A -2.4279
77 G A -2.0503
78 G A -2.1981
79 D A -2.7994
80 H A -2.3514
81 S A 0.0000
82 K A -1.7334
83 P A -0.8112
84 L A 0.2046
85 V A 1.7429
86 A A 1.2466
87 T A 0.4606
88 F A 0.0000
89 T A -1.0835
90 T A -1.8890
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Laboratory of Theory of Biopolymers 2018