Project name: cluster0

Status: done

Started: 2025-10-27 08:40:45
Settings
Chain sequence(s) A: VFIPKPFRAFAFVTFADDQIAQSLCGEDLIIKGISVHISNAEPKHNSNRQ
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:35)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:35)
Show buried residues

Minimal score value
-3.876
Maximal score value
2.7799
Average score
-0.8529
Total score value
-42.6465

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
220 V A 2.6960
221 F A 2.7799
222 I A 1.2315
223 P A -0.1555
224 K A -1.5212
225 P A -1.2280
226 F A -0.8196
227 R A -1.6881
228 A A -0.3767
229 F A 0.1773
230 A A 0.0000
231 F A 1.0949
232 V A 0.0000
233 T A 1.5479
234 F A 0.9323
235 A A -0.3861
236 D A -1.6142
237 D A -2.7228
238 Q A -2.1265
239 I A -0.5954
240 A A 0.0000
241 Q A -2.2209
242 S A -1.3774
243 L A -0.8612
244 C A -1.3141
245 G A -1.7341
246 E A -2.8427
247 D A -2.3162
248 L A 0.2373
249 I A 1.8502
250 I A 1.0547
251 K A -0.6961
252 G A 0.1553
253 I A 1.6086
254 S A 0.9271
255 V A 0.2280
256 H A -0.7434
257 I A -0.1386
258 S A -0.7739
259 N A -1.2828
260 A A -1.4855
261 E A -2.3777
262 P A -2.3058
263 K A -3.3506
264 H A -3.5310
265 N A -3.3718
266 S A -2.9958
267 N A -3.7146
268 R A -3.8760
269 Q A -2.6232
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Laboratory of Theory of Biopolymers 2018