Project name: query_structure

Status: done

Started: 2025-11-29 10:39:26
Settings
Chain sequence(s) A: GTVPCGESCVFIPCITGIAGCSCKNKVCYID
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:26)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:27)
Show buried residues

Minimal score value
-2.5146
Maximal score value
2.9203
Average score
0.4105
Total score value
12.7253

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 G A -0.8559
2 T A 0.3309
3 V A 1.4764
4 P A 0.4563
5 C A 0.5267
6 G A -0.1554
7 E A 0.1205
8 S A 0.4429
9 C A 1.1162
10 V A 2.2354
11 F A 2.9203
12 I A 2.3367
13 P A 1.3952
14 C A 1.7020
15 I A 2.4030
16 T A 1.5617
17 G A 1.2170
18 I A 2.2373
19 A A 1.0057
20 G A 0.1224
21 C A 0.3848
22 S A -0.4829
23 C A -0.7688
24 K A -2.5146
25 N A -2.3369
26 K A -1.5273
27 V A -0.8154
28 C A 0.0000
29 Y A -0.2147
30 I A -0.0174
31 D A -1.5768
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Laboratory of Theory of Biopolymers 2018