| Chain sequence(s) |
A: GNNQQNY
B: GNNQQNY input PDB |
| Selected Chain(s) | A,B |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:16)
[INFO] Main: Simulation completed successfully. (00:00:17)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | G | A | -3.1096 | |
| 2 | N | A | -4.5800 | |
| 3 | N | A | -4.5318 | |
| 4 | Q | A | -3.8285 | |
| 5 | Q | A | -2.9765 | |
| 6 | N | A | -2.0430 | |
| 7 | Y | A | 0.2064 | |
| 1 | G | B | -4.1528 | |
| 2 | N | B | -4.9246 | |
| 3 | N | B | -4.2378 | |
| 4 | Q | B | -3.8296 | |
| 5 | Q | B | -2.5679 | |
| 6 | N | B | -1.7526 | |
| 7 | Y | B | 0.0350 |