Project name: Sup35_2

Status: done

Started: 2026-06-24 04:46:15
Settings
Chain sequence(s) A: GNNQQNY
B: GNNQQNY
input PDB
Selected Chain(s) A,B
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:16)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:17)
Show buried residues

Minimal score value
-4.9246
Maximal score value
0.2064
Average score
-3.021
Total score value
-42.2933

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 G A -3.1096
2 N A -4.5800
3 N A -4.5318
4 Q A -3.8285
5 Q A -2.9765
6 N A -2.0430
7 Y A 0.2064
1 G B -4.1528
2 N B -4.9246
3 N B -4.2378
4 Q B -3.8296
5 Q B -2.5679
6 N B -1.7526
7 Y B 0.0350
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Laboratory of Theory of Biopolymers 2018