| Chain sequence(s) |
A: QVQLLESGGGLVQPGGSLRLSCAASGGTFTNYKMGWFRQAPGKGREFVAAITWSGSSTDYADSVKGRFTISRDNAKNTLYLQMNSLRAEDTAVYYCVAKYWRNEGYLSDYPYWGQGTQVTVSS
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:05)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:05)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:05)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:05)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:05)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:51)
[INFO] Main: Simulation completed successfully. (00:01:52)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 261 | Q | A | -1.6591 | |
| 262 | V | A | 0.0000 | |
| 263 | Q | A | -1.1925 | |
| 264 | L | A | 0.0000 | |
| 265 | L | A | 0.5781 | |
| 266 | E | A | -0.1800 | |
| 267 | S | A | -0.7994 | |
| 268 | G | A | -1.2533 | |
| 269 | G | A | -0.8650 | |
| 270 | G | A | -0.0831 | |
| 271 | L | A | 0.9541 | |
| 272 | V | A | 0.0000 | |
| 273 | Q | A | -1.4856 | |
| 274 | P | A | -1.7991 | |
| 275 | G | A | -1.5367 | |
| 276 | G | A | -1.0619 | |
| 277 | S | A | -1.4274 | |
| 278 | L | A | -1.1505 | |
| 279 | R | A | -2.2826 | |
| 280 | L | A | 0.0000 | |
| 281 | S | A | -0.6057 | |
| 282 | C | A | 0.0000 | |
| 283 | A | A | -0.2651 | |
| 284 | A | A | 0.0000 | |
| 285 | S | A | -0.9143 | |
| 286 | G | A | -1.4130 | |
| 287 | G | A | -1.2367 | |
| 288 | T | A | -0.7496 | |
| 289 | F | A | 0.0000 | |
| 290 | T | A | -0.3236 | |
| 291 | N | A | -0.5925 | |
| 292 | Y | A | 0.0000 | |
| 293 | K | A | -0.5558 | |
| 294 | M | A | 0.0000 | |
| 295 | G | A | 0.0000 | |
| 296 | W | A | 0.0000 | |
| 297 | F | A | 0.0000 | |
| 298 | R | A | 0.0000 | |
| 299 | Q | A | -2.0378 | |
| 300 | A | A | -1.8826 | |
| 301 | P | A | -1.2743 | |
| 302 | G | A | -1.7606 | |
| 303 | K | A | -2.9183 | |
| 304 | G | A | -2.7206 | |
| 305 | R | A | -3.0465 | |
| 306 | E | A | -2.2619 | |
| 307 | F | A | -0.8103 | |
| 308 | V | A | 0.0000 | |
| 309 | A | A | 0.0000 | |
| 310 | A | A | 0.0000 | |
| 311 | I | A | 0.0000 | |
| 312 | T | A | -0.3563 | |
| 313 | W | A | -0.0098 | |
| 314 | S | A | -0.2507 | |
| 315 | G | A | -0.4718 | |
| 316 | S | A | -0.3669 | |
| 317 | S | A | -0.5311 | |
| 318 | T | A | -0.6228 | |
| 319 | D | A | -1.1519 | |
| 320 | Y | A | -1.2290 | |
| 321 | A | A | -1.5422 | |
| 322 | D | A | -2.5771 | |
| 323 | S | A | -1.7744 | |
| 324 | V | A | 0.0000 | |
| 325 | K | A | -2.7607 | |
| 326 | G | A | -1.7737 | |
| 327 | R | A | -1.5995 | |
| 328 | F | A | 0.0000 | |
| 329 | T | A | -1.0548 | |
| 330 | I | A | 0.0000 | |
| 331 | S | A | -0.4744 | |
| 332 | R | A | -0.8207 | |
| 333 | D | A | -1.3746 | |
| 334 | N | A | -1.3734 | |
| 335 | A | A | -1.2712 | |
| 336 | K | A | -2.1964 | |
| 337 | N | A | -1.6856 | |
| 338 | T | A | -0.9730 | |
| 339 | L | A | 0.0000 | |
| 340 | Y | A | -0.6562 | |
| 341 | L | A | 0.0000 | |
| 342 | Q | A | -1.5655 | |
| 343 | M | A | 0.0000 | |
| 344 | N | A | -1.5788 | |
| 345 | S | A | -1.3482 | |
| 346 | L | A | 0.0000 | |
| 347 | R | A | -2.7834 | |
| 348 | A | A | -1.9635 | |
| 349 | E | A | -2.4015 | |
| 350 | D | A | 0.0000 | |
| 351 | T | A | -0.9425 | |
| 352 | A | A | 0.0000 | |
| 353 | V | A | -0.4999 | |
| 354 | Y | A | 0.0000 | |
| 355 | Y | A | -0.2541 | |
| 356 | C | A | 0.0000 | |
| 357 | V | A | 0.0000 | |
| 358 | A | A | 0.0000 | |
| 359 | K | A | 0.0000 | |
| 360 | Y | A | -0.8253 | |
| 361 | W | A | -1.2766 | |
| 362 | R | A | -2.7430 | |
| 363 | N | A | -2.7736 | |
| 364 | E | A | -2.8358 | |
| 365 | G | A | -1.5563 | |
| 366 | Y | A | 0.1601 | |
| 367 | L | A | -0.1960 | |
| 368 | S | A | -0.5245 | |
| 369 | D | A | -1.8325 | |
| 370 | Y | A | 0.0000 | |
| 371 | P | A | -0.4376 | |
| 372 | Y | A | -0.1507 | |
| 373 | W | A | 0.0773 | |
| 374 | G | A | -0.2722 | |
| 375 | Q | A | -1.1086 | |
| 376 | G | A | -0.6384 | |
| 377 | T | A | -0.7857 | |
| 378 | Q | A | -1.1057 | |
| 379 | V | A | 0.0000 | |
| 380 | T | A | -0.3757 | |
| 381 | V | A | 0.0000 | |
| 382 | S | A | -0.7812 | |
| 383 | S | A | -0.7524 |