Chain sequence(s) |
A: KIFIKIWIKLLKIW
input PDB |
Selected Chain(s) | A |
Distance of aggregation | 10 Å |
FoldX usage | Yes |
Dynamic mode | No |
Automated mutations | No |
Mutated residues | IQ13A,FW3A,IQ2A,IQ4A,IQ6A,IQ8A |
Energy difference between WT (input) and mutated protein (by FoldX) | 0.559754 kcal/mol |
Downloads | Download all the data |
Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00) [WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow to prevent this behavior) (00:00:00) [INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00) [INFO] runJob: Creating pdb object from: input.pdb (00:00:00) [INFO] FoldX: Starting FoldX energy minimalization (00:00:00) [INFO] FoldX: Building mutant model (00:00:09) [INFO] FoldX: Starting FoldX energy minimalization (00:02:00) [INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:02:11) [INFO] Main: Simulation completed successfully. (00:02:11) |
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
residue index | residue name | chain | Aggrescan3D score | mutation |
---|---|---|---|---|
residue index | residue name | chain | Aggrescan3D score | |
1 | K | A | -2.8337 | |
2 | Q | A | -2.5517 | mutated: IQ2A |
3 | W | A | -1.5551 | mutated: FW3A |
4 | Q | A | -2.9513 | mutated: IQ4A |
5 | K | A | -3.6341 | |
6 | Q | A | -2.7722 | mutated: IQ6A |
7 | W | A | -1.9014 | |
8 | Q | A | -2.6808 | mutated: IQ8A |
9 | K | A | -3.0775 | |
10 | L | A | -1.4862 | |
11 | L | A | -0.8192 | |
12 | K | A | -2.2443 | |
13 | Q | A | -1.5765 | mutated: IQ13A |
14 | W | A | 0.2260 |