Project name: 4-5R1

Status: done

Started: 2025-02-21 02:06:48
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Chain sequence(s) A: MTEQQWNFAGIEAAASAIQGNVTSIHSLLDEGKQSLTKLAAAWGGSGSEAYQGVQQKWDATATELNNALQNLARTISEAGQAMASTEGNVTGMFAFAVTNDGVI
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:11)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:12)
Show buried residues

Minimal score value
-2.9196
Maximal score value
2.7371
Average score
-0.9049
Total score value
-94.1109

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 M A 0.2781
2 T A -0.7598
3 E A -1.9872
4 Q A -1.8059
5 Q A -1.2863
6 W A -0.4228
7 N A -1.6434
8 F A -1.1023
9 A A -0.6175
10 G A -0.8313
11 I A -0.7567
12 E A -1.7465
13 A A -0.9140
14 A A -0.4814
15 A A -1.1232
16 S A -1.0148
17 A A -0.7685
18 I A -0.9046
19 Q A -1.4760
20 G A -1.3039
21 N A -1.5748
22 V A -1.0081
23 T A -0.8564
24 S A -0.6013
25 I A -0.3643
26 H A -1.1514
27 S A -0.9989
28 L A -0.1316
29 L A -1.1586
30 D A -2.7964
31 E A -2.8963
32 G A -2.1944
33 K A -2.5457
34 Q A -2.9196
35 S A -2.1150
36 L A -1.2731
37 T A -1.5866
38 K A -1.6973
39 L A -0.2147
40 A A -0.3436
41 A A -0.2163
42 A A 0.1521
43 W A 0.5517
44 G A -0.2018
45 G A -0.8296
46 S A -0.7483
47 G A -0.7724
48 S A -1.3471
49 E A -2.2252
50 A A -1.1182
51 Y A -0.8782
52 Q A -1.9689
53 G A -1.4493
54 V A -0.6647
55 Q A -1.5465
56 Q A -2.1348
57 K A -2.1371
58 W A -1.5072
59 D A -1.6083
60 A A -1.3340
61 T A -1.3511
62 A A -1.2928
63 T A -1.4754
64 E A -2.1624
65 L A -1.0600
66 N A -1.5062
67 N A -2.2305
68 A A -1.3745
69 L A -1.3830
70 Q A -2.1867
71 N A -1.6158
72 L A -0.7111
73 A A -1.5056
74 R A -2.1362
75 T A -1.4273
76 I A -1.2642
77 S A -1.9564
78 E A -2.4504
79 A A -1.4098
80 G A 0.0000
81 Q A -2.0093
82 A A -1.1543
83 M A -1.0593
84 A A -1.2380
85 S A -1.1108
86 T A -1.1570
87 E A -1.7900
88 G A -1.2004
89 N A -1.1955
90 V A 0.3845
91 T A 0.3692
92 G A 0.7232
93 M A 1.9366
94 F A 2.7147
95 A A 2.2221
96 F A 2.6206
97 A A 1.6472
98 V A 2.4416
99 T A 1.0488
100 N A -0.7961
101 D A -0.9752
102 G A 0.1050
103 V A 2.2040
104 I A 2.7371
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Laboratory of Theory of Biopolymers 2018