Project name: 5c26f8530852e7d

Status: done

Started: 2024-06-12 23:44:50
Settings
Chain sequence(s) A: MALCVILIASIAVGAAAWGREGHRLTCMIAEPFLSSESKVALEELLPGRDLPELCSWADDIRRSYRFRWTGPLHYIDTPDNLCGYDYDRDCHDSRGEKDMCVAGAINNYSRQLETFQEAKLSLHKSYNLTEALLFLAHYVGDIHQPLHVAFTADAGGNGVHVHWFGRKANLHHIWDTEFIDRAKRLYYHDIFRMLRNISMSITENFDAWSSCETDPEACIDSYATESIHASCRWAYKDAVEGSYLEDDYFSSRLPIVEQRLAQGGVRLASILNRIFGAKSSESSI
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:03:15)
[INFO]       Main:     Simulation completed successfully.                                          (00:03:16)
Show buried residues

Minimal score value
-4.2279
Maximal score value
4.6183
Average score
-0.6843
Total score value
-195.0288

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 M A 1.5688
2 A A 1.7275
3 L A 2.9509
4 C A 3.2633
5 V A 4.2426
6 I A 4.6183
7 L A 4.0896
8 I A 3.8121
9 A A 2.2540
10 S A 1.8430
11 I A 2.6785
12 A A 1.6755
13 V A 2.0516
14 G A 0.4574
15 A A 0.1535
16 A A -0.4164
17 A A 0.0000
18 W A 0.0000
19 G A 0.0000
20 R A -2.3355
21 E A 0.0000
22 G A 0.0000
23 H A 0.0000
24 R A -1.2978
25 L A 0.0000
26 T A 0.0000
27 C A 0.0000
28 M A -0.5467
29 I A 0.0000
30 A A 0.0000
31 E A -1.2944
32 P A -0.6035
33 F A -0.0770
34 L A 0.0000
35 S A -0.6888
36 S A -0.4703
37 E A -0.9564
38 S A 0.0000
39 K A -1.1537
40 V A 0.1080
41 A A 0.0000
42 L A 0.0000
43 E A -2.7846
44 E A -1.8672
45 L A -1.3973
46 L A 0.0000
47 P A -2.2858
48 G A -2.3917
49 R A -3.6208
50 D A -3.6981
51 L A 0.0000
52 P A -2.0736
53 E A -2.8879
54 L A -1.7147
55 C A 0.0000
56 S A -1.2597
57 W A -0.8875
58 A A 0.0000
59 D A 0.0000
60 D A -2.2194
61 I A -1.6177
62 R A -1.9580
63 R A -2.7092
64 S A -1.5209
65 Y A -0.4473
66 R A -1.7413
67 F A -1.4824
68 R A -2.0446
69 W A -0.4258
70 T A 0.0000
71 G A -0.5875
72 P A -0.3522
73 L A 0.0000
74 H A 0.0000
75 Y A 0.3040
76 I A 0.0000
77 D A -0.9108
78 T A 0.0000
79 P A -0.9507
80 D A -1.8408
81 N A -1.3478
82 L A 0.1184
83 C A -0.3416
84 G A -0.2915
85 Y A -0.7793
86 D A -1.7234
87 Y A -2.1095
88 D A -2.9310
89 R A -2.3129
90 D A 0.0000
91 C A 0.0000
92 H A -3.1534
93 D A 0.0000
94 S A -1.8760
95 R A -2.9620
96 G A -3.0860
97 E A -3.8986
98 K A -4.2279
99 D A -3.3613
100 M A -2.0455
101 C A 0.0000
102 V A 0.0000
103 A A 0.0000
104 G A 0.0000
105 A A 0.0000
106 I A 0.0000
107 N A -1.7799
108 N A -1.8221
109 Y A 0.0000
110 S A -1.8155
111 R A -2.8158
112 Q A -1.8983
113 L A 0.0000
114 E A -3.0656
115 T A -2.3278
116 F A -1.8756
117 Q A -2.3057
118 E A -2.5813
119 A A -2.0698
120 K A -1.8224
121 L A 0.0023
122 S A -0.3811
123 L A 0.4750
124 H A -1.2406
125 K A -2.2459
126 S A -1.1186
127 Y A -0.8462
128 N A -1.4981
129 L A 0.0000
130 T A -0.6854
131 E A -0.7838
132 A A 0.0000
133 L A 0.0000
134 L A 0.0000
135 F A 0.0000
136 L A 0.0000
137 A A 0.0000
138 H A 0.0000
139 Y A 0.0000
140 V A 0.0000
141 G A 0.0000
142 D A 0.0000
143 I A 0.0000
144 H A 0.0000
145 Q A 0.0000
146 P A 0.0000
147 L A 0.0000
148 H A 0.0000
149 V A 0.0000
150 A A 0.0000
151 F A 0.0000
152 T A -0.8783
153 A A -0.7153
154 D A -0.7137
155 A A -0.2642
156 G A 0.0000
157 G A 0.0000
158 N A -0.4438
159 G A -0.8983
160 V A -0.6841
161 H A -1.4780
162 V A 0.0000
163 H A -1.5702
164 W A 0.0000
165 F A -0.9109
166 G A -1.4188
167 R A -2.6223
168 K A -2.7380
169 A A -1.7547
170 N A -1.0739
171 L A 0.0000
172 H A 0.0000
173 H A -0.3834
174 I A 0.0000
175 W A 0.0000
176 D A 0.0000
177 T A -0.8465
178 E A -0.8798
179 F A 0.0000
180 I A 0.0000
181 D A -1.5388
182 R A -1.2373
183 A A 0.0000
184 K A -1.3101
185 R A -1.8307
186 L A 0.2526
187 Y A 0.6603
188 Y A 0.0000
189 H A -1.4607
190 D A -0.9471
191 I A 0.0000
192 F A 0.0971
193 R A -1.4000
194 M A 0.0000
195 L A -0.6992
196 R A -1.7777
197 N A -1.3197
198 I A 0.0000
199 S A -0.6537
200 M A 0.0335
201 S A -0.6208
202 I A 0.0000
203 T A -0.8798
204 E A -1.9957
205 N A -1.5097
206 F A -0.8770
207 D A -1.9209
208 A A -1.0180
209 W A 0.0000
210 S A -0.6895
211 S A -1.0969
212 C A -1.6790
213 E A -2.1211
214 T A -1.6574
215 D A -2.0598
216 P A -2.0055
217 E A -2.3251
218 A A -1.5417
219 C A -1.2755
220 I A 0.0000
221 D A -1.1278
222 S A -0.7572
223 Y A 0.0000
224 A A 0.0000
225 T A -0.6648
226 E A -0.8348
227 S A 0.0000
228 I A 0.0000
229 H A -0.9948
230 A A 0.0000
231 S A 0.0000
232 C A -1.1190
233 R A -2.2474
234 W A -1.2316
235 A A 0.0000
236 Y A -0.8707
237 K A -2.0134
238 D A -2.0109
239 A A 0.0000
240 V A 0.2778
241 E A -1.3772
242 G A -0.8477
243 S A -0.2661
244 Y A 0.0462
245 L A 0.0000
246 E A -1.8902
247 D A -2.9329
248 D A -2.9915
249 Y A 0.0000
250 F A 0.0000
251 S A -1.4719
252 S A -0.8774
253 R A 0.0000
254 L A 0.0000
255 P A -0.4599
256 I A -0.1674
257 V A 0.0000
258 E A -0.7653
259 Q A -0.9693
260 R A 0.0000
261 L A 0.0000
262 A A 0.0000
263 Q A 0.0000
264 G A 0.0000
265 G A 0.0000
266 V A 0.0000
267 R A 0.0000
268 L A 0.0000
269 A A 0.0000
270 S A 0.0000
271 I A -0.2657
272 L A 0.0000
273 N A -0.9553
274 R A -1.6655
275 I A -1.4909
276 F A -1.1201
277 G A -1.4549
278 A A -1.8232
279 K A -2.9584
280 S A -1.8750
281 S A -1.5353
282 E A -2.1499
283 S A -1.1016
284 S A -0.1942
285 I A 1.3564
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Laboratory of Theory of Biopolymers 2018