Project name: clone82

Status: done

Started: 2026-07-28 07:03:40
Settings
Chain sequence(s) H: EVQLLESGGGLVQPGGSLRLSCAASGFTIRSYAMSWVRQAPGKGLEWVSGVSGSSSITYYADSVKGRFTVSRDTSKNTFYLQMSSLRTEDTAVYYCAAFLGSGTYRWDHWGQGTLVAVSP
L: QSVLTQPPSVSGAPGQRVTISCTGNSSNIGAGYDVQWYQQLPRTAPKLLIYANTDRPSGVPDRFSGSKSGTSVSLAITGLLAEDEADYYCQSFDSTLNAWIFGGGTKLTVL
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:57)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:58)
Show buried residues

Minimal score value
-2.6367
Maximal score value
1.6051
Average score
-0.4941
Total score value
-114.1323

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 E H -1.8236
2 V H -0.7316
3 Q H -0.9619
4 L H 0.0000
5 L H 0.3735
6 E H 0.0000
7 S H -0.1979
8 G H -0.7147
9 G H 0.1013
11 G H 0.6285
12 L H 1.3957
13 V H 0.0508
14 Q H -1.3141
15 P H -1.5145
16 G H -1.3129
17 G H -0.8314
18 S H -0.9771
19 L H -0.5494
20 R H -1.5132
21 L H 0.0000
22 S H 0.0000
23 C H 0.0000
24 A H -0.2444
25 A H -0.2897
26 S H -0.5844
27 G H -0.9909
28 F H -0.5736
29 T H -0.8838
30 I H 0.0000
35 R H -2.1061
36 S H -1.0451
37 Y H -0.5164
38 A H -0.0320
39 M H 0.0000
40 S H 0.0000
41 W H 0.0000
42 V H 0.0000
43 R H 0.0000
44 Q H -0.6546
45 A H -1.0409
46 P H -0.8375
47 G H -1.6809
48 K H -2.2545
49 G H -1.6566
50 L H 0.0000
51 E H -1.0571
52 W H 0.0000
53 V H 0.0000
54 S H 0.0000
55 G H 0.0000
56 V H 0.0000
57 S H 0.1576
58 G H -0.6458
59 S H -0.5275
62 S H -0.1599
63 S H 0.4404
64 I H 1.6051
65 T H 0.9631
66 Y H 0.4184
67 Y H -0.7643
68 A H -1.2517
69 D H -2.2646
70 S H -1.7160
71 V H 0.0000
72 K H -2.5274
74 G H -1.6749
75 R H -1.4250
76 F H 0.0000
77 T H -0.7888
78 V H 0.0000
79 S H -0.4439
80 R H -1.0124
81 D H -1.3994
82 T H -1.4900
83 S H -1.4620
84 K H -2.0813
85 N H -1.6274
86 T H -0.9848
87 F H 0.0000
88 Y H -0.5177
89 L H 0.0000
90 Q H -1.2791
91 M H 0.0000
92 S H -0.9685
93 S H -1.0208
94 L H 0.0000
95 R H -2.2084
96 T H -1.7696
97 E H -2.2585
98 D H 0.0000
99 T H -0.4094
100 A H 0.0000
101 V H 0.6499
102 Y H 0.0000
103 Y H 0.0000
104 C H 0.0000
105 A H 0.0000
106 A H 0.0000
107 F H 0.0000
108 L H 0.1220
109 G H -0.2670
110 S H -0.3597
111 G H -0.4054
112 T H 0.0231
113 Y H 0.6943
114 R H -0.0102
115 W H 0.0000
116 D H -0.5073
117 H H -0.6430
118 W H -0.4598
119 G H 0.0000
120 Q H -1.1529
121 G H -0.1421
122 T H 0.3084
123 L H 1.1521
124 V H 0.0000
125 A H 0.3326
126 V H 0.0000
127 S H -0.6836
128 P H -0.7294
1 Q L -1.1485
2 S L -0.3187
3 V L 0.5286
4 L L 0.0000
5 T L -0.2983
6 Q L -0.4130
7 P L -0.4755
8 P L -0.7139
9 S L -0.6354
11 V L -0.2130
12 S L -0.0034
13 G L -0.1494
14 A L 0.0209
15 P L -0.4358
16 G L -1.3936
17 Q L -2.1303
18 R L -2.6367
19 V L 0.0000
20 T L -0.4937
21 I L 0.0000
22 S L -0.2285
23 C L 0.0000
24 T L -0.3737
25 G L -0.3908
26 N L -0.8835
27 S L -0.8402
28 S L -0.3249
29 N L 0.0000
30 I L 0.0000
31 G L -1.1001
35 A L -0.6420
36 G L -0.7438
37 Y L -0.2397
38 D L -0.7682
39 V L 0.0000
40 Q L 0.0000
41 W L 0.0000
42 Y L 0.0000
43 Q L 0.0000
44 Q L 0.0000
45 L L -0.8983
46 P L -1.1727
47 R L -2.0349
48 T L -1.2263
49 A L -0.9177
50 P L 0.0000
51 K L -0.9474
52 L L 0.0000
53 L L 0.0000
54 I L 0.0000
55 Y L -0.4817
56 A L -0.5672
57 N L -0.9026
65 T L -0.9684
66 D L -1.2762
67 R L -1.7580
68 P L -0.9777
69 S L -0.7442
70 G L -0.8795
71 V L -1.0881
72 P L -1.2984
74 D L -2.1541
75 R L -1.2834
76 F L 0.0000
77 S L -0.9492
78 G L -0.6544
79 S L -0.6749
80 K L -1.1105
83 S L -0.8261
84 G L -1.0332
85 T L -0.9585
86 S L -0.7182
87 V L 0.0000
88 S L -0.3997
89 L L 0.0000
90 A L -0.5328
91 I L 0.0000
92 T L -1.5846
93 G L -1.3639
94 L L 0.0000
95 L L -0.0812
96 A L -0.4340
97 E L -1.6453
98 D L 0.0000
99 E L -1.1141
100 A L 0.0000
101 D L -1.0447
102 Y L 0.0000
103 Y L 0.0000
104 C L 0.0000
105 Q L 0.0000
106 S L 0.0000
107 F L 0.2304
108 D L 0.0000
109 S L -0.1990
110 T L 0.0563
113 L L 0.3183
114 N L -0.5649
115 A L -0.1932
116 W L 0.0000
117 I L 0.1691
118 F L 0.0000
119 G L 0.0000
120 G L -1.0043
121 G L 0.0000
122 T L 0.0000
123 K L -1.1583
124 L L 0.0000
125 T L -0.0295
126 V L 0.4213
127 L L 1.4822
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Laboratory of Theory of Biopolymers 2018