| Chain sequence(s) |
A: DAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGLMVGGVVIA
C: DAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGLMVGGVVIA B: DAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGLMVGGVVIA E: DAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGLMVGGVVIA D: DAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGLMVGGVVIA G: DAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGLMVGGVVIA F: DAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGLMVGGVVIA H: GYEVHHQKLVFFAEDVGSNKGAIIGLMVGGVVIA input PDB |
| Selected Chain(s) | A,C,B,E,D,G,F,H |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:09:14)
[INFO] Main: Simulation completed successfully. (00:09:17)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | D | A | -2.0427 | |
| 2 | A | A | -1.3103 | |
| 3 | E | A | -2.0955 | |
| 4 | F | A | -0.8345 | |
| 5 | R | A | -2.4694 | |
| 6 | H | A | -2.6651 | |
| 7 | D | A | -2.7531 | |
| 8 | S | A | -1.9115 | |
| 9 | G | A | -0.8410 | |
| 10 | Y | A | -0.1172 | |
| 11 | E | A | -1.2556 | |
| 12 | V | A | -0.6342 | |
| 13 | H | A | -1.9694 | |
| 14 | H | A | -2.3167 | |
| 15 | Q | A | -2.5087 | |
| 16 | K | A | -2.3205 | |
| 17 | L | A | -0.5697 | |
| 18 | V | A | -0.2551 | |
| 19 | F | A | 0.4026 | |
| 20 | F | A | -0.7183 | |
| 21 | A | A | -1.5971 | |
| 22 | E | A | -2.7543 | |
| 23 | D | A | -2.9894 | |
| 24 | V | A | 0.0000 | |
| 25 | G | A | -1.9891 | |
| 26 | S | A | -1.6650 | |
| 27 | N | A | -2.2008 | |
| 28 | K | A | -1.8081 | |
| 29 | G | A | -0.8692 | |
| 30 | A | A | -0.3840 | |
| 31 | I | A | -0.4000 | |
| 32 | I | A | 0.0000 | |
| 33 | G | A | 0.0000 | |
| 34 | L | A | 0.0000 | |
| 35 | M | A | 0.0000 | |
| 36 | V | A | 0.4543 | |
| 37 | G | A | 0.0000 | |
| 38 | G | A | 0.3709 | |
| 39 | V | A | 0.6245 | |
| 40 | V | A | 0.0000 | |
| 41 | I | A | 0.0000 | |
| 42 | A | A | -0.0059 | |
| 1 | D | B | -2.0525 | |
| 2 | A | B | -1.4851 | |
| 3 | E | B | -1.9552 | |
| 4 | F | B | -0.2651 | |
| 5 | R | B | -1.8858 | |
| 6 | H | B | -2.0252 | |
| 7 | D | B | -1.7187 | |
| 8 | S | B | -1.3306 | |
| 9 | G | B | 0.0000 | |
| 10 | Y | B | 0.5975 | |
| 11 | E | B | -0.0487 | |
| 12 | V | B | -0.0672 | |
| 13 | H | B | -1.3138 | |
| 14 | H | B | -1.8203 | |
| 15 | Q | B | -2.1273 | |
| 16 | K | B | -1.4694 | |
| 17 | L | B | 0.0000 | |
| 18 | V | B | 0.4234 | |
| 19 | F | B | 0.0000 | |
| 20 | F | B | 0.2511 | |
| 21 | A | B | 0.0000 | |
| 22 | E | B | -2.0122 | |
| 23 | D | B | -2.5728 | |
| 24 | V | B | -1.5085 | |
| 25 | G | B | -1.5640 | |
| 26 | S | B | -1.2546 | |
| 27 | N | B | -1.2009 | |
| 28 | K | B | -1.1472 | |
| 29 | G | B | -0.0620 | |
| 30 | A | B | 0.0000 | |
| 31 | I | B | 0.0000 | |
| 32 | I | B | 0.0000 | |
| 33 | G | B | 0.0000 | |
| 34 | L | B | 0.0000 | |
| 35 | M | B | 0.4929 | |
| 36 | V | B | 0.0000 | |
| 37 | G | B | 0.0000 | |
| 38 | G | B | 0.0000 | |
| 39 | V | B | 0.3659 | |
| 40 | V | B | 0.0000 | |
| 41 | I | B | 0.0000 | |
| 42 | A | B | -0.0204 | |
| 1 | D | C | -2.0392 | |
| 2 | A | C | -1.3005 | |
| 3 | E | C | -1.9934 | |
| 4 | F | C | -0.5983 | |
| 5 | R | C | -2.1902 | |
| 6 | H | C | -1.7471 | |
| 7 | D | C | -1.9819 | |
| 8 | S | C | -1.3115 | |
| 9 | G | C | 0.0000 | |
| 10 | Y | C | 0.2025 | |
| 11 | E | C | -0.0966 | |
| 12 | V | C | 0.0806 | |
| 13 | H | C | -1.1422 | |
| 14 | H | C | -1.8355 | |
| 15 | Q | C | -1.4549 | |
| 16 | K | C | -0.6986 | |
| 17 | L | C | 0.0000 | |
| 18 | V | C | 0.9415 | |
| 19 | F | C | 1.0942 | |
| 20 | F | C | 1.0375 | |
| 21 | A | C | -0.4790 | |
| 22 | E | C | -2.0489 | |
| 23 | D | C | -1.9309 | |
| 24 | V | C | -0.8631 | |
| 25 | G | C | -1.1601 | |
| 26 | S | C | -0.8366 | |
| 27 | N | C | -0.9540 | |
| 28 | K | C | -0.7122 | |
| 29 | G | C | 0.0000 | |
| 30 | A | C | 0.0000 | |
| 31 | I | C | 0.0000 | |
| 32 | I | C | 0.0000 | |
| 33 | G | C | 0.0000 | |
| 34 | L | C | 0.0000 | |
| 35 | M | C | 0.8744 | |
| 36 | V | C | 0.0000 | |
| 37 | G | C | 0.0000 | |
| 38 | G | C | 0.0000 | |
| 39 | V | C | 1.1025 | |
| 40 | V | C | 0.0000 | |
| 41 | I | C | 0.0000 | |
| 42 | A | C | -0.0923 | |
| 1 | D | D | -2.2256 | |
| 2 | A | D | -1.5421 | |
| 3 | E | D | -1.9451 | |
| 4 | F | D | -0.6555 | |
| 5 | R | D | -2.3769 | |
| 6 | H | D | -2.9690 | |
| 7 | D | D | -2.5890 | |
| 8 | S | D | -1.7067 | |
| 9 | G | D | -0.1573 | |
| 10 | Y | D | 1.1674 | |
| 11 | E | D | 0.2595 | |
| 12 | V | D | 0.5589 | |
| 13 | H | D | -1.0749 | |
| 14 | H | D | -1.9683 | |
| 15 | Q | D | -1.7770 | |
| 16 | K | D | -1.3439 | |
| 17 | L | D | 0.1927 | |
| 18 | V | D | 0.0000 | |
| 19 | F | D | 0.8975 | |
| 20 | F | D | 0.0096 | |
| 21 | A | D | -1.2865 | |
| 22 | E | D | -2.7484 | |
| 23 | D | D | -2.8965 | |
| 24 | V | D | -1.5401 | |
| 25 | G | D | -1.5426 | |
| 26 | S | D | -1.1997 | |
| 27 | N | D | -1.3772 | |
| 28 | K | D | -1.3205 | |
| 29 | G | D | -0.6401 | |
| 30 | A | D | 0.0000 | |
| 31 | I | D | -0.1108 | |
| 32 | I | D | 0.1060 | |
| 33 | G | D | 0.0000 | |
| 34 | L | D | 0.0000 | |
| 35 | M | D | 0.0000 | |
| 36 | V | D | 0.0000 | |
| 37 | G | D | 0.0000 | |
| 38 | G | D | 0.0000 | |
| 39 | V | D | 0.0000 | |
| 40 | V | D | 1.0875 | |
| 41 | I | D | 1.2380 | |
| 42 | A | D | 0.8811 | |
| 1 | D | E | -2.0549 | |
| 2 | A | E | -1.4187 | |
| 3 | E | E | -2.0386 | |
| 4 | F | E | -0.6612 | |
| 5 | R | E | -2.7980 | |
| 6 | H | E | -2.9164 | |
| 7 | D | E | -2.8903 | |
| 8 | S | E | -1.9351 | |
| 9 | G | E | -0.2593 | |
| 10 | Y | E | 1.1707 | |
| 11 | E | E | -0.0307 | |
| 12 | V | E | -0.2388 | |
| 13 | H | E | -1.7468 | |
| 14 | H | E | -2.0814 | |
| 15 | Q | E | -2.1300 | |
| 16 | K | E | -2.2972 | |
| 17 | L | E | -0.0536 | |
| 18 | V | E | 0.5641 | |
| 19 | F | E | 1.6379 | |
| 20 | F | E | 1.4275 | |
| 21 | A | E | -0.5329 | |
| 22 | E | E | -2.4500 | |
| 23 | D | E | -3.1100 | |
| 24 | V | E | -1.3436 | |
| 25 | G | E | -1.5408 | |
| 26 | S | E | -1.0273 | |
| 27 | N | E | -1.2923 | |
| 28 | K | E | 0.0000 | |
| 29 | G | E | -0.7436 | |
| 30 | A | E | -0.2911 | |
| 31 | I | E | 0.0000 | |
| 32 | I | E | 0.0000 | |
| 33 | G | E | 0.1355 | |
| 34 | L | E | 0.0000 | |
| 35 | M | E | 0.6297 | |
| 36 | V | E | 0.0000 | |
| 37 | G | E | 0.0000 | |
| 38 | G | E | 0.8210 | |
| 39 | V | E | 1.2156 | |
| 40 | V | E | 1.1692 | |
| 41 | I | E | 0.0000 | |
| 42 | A | E | 0.3744 | |
| 1 | D | F | -2.0251 | |
| 2 | A | F | -1.3977 | |
| 3 | E | F | -1.9953 | |
| 4 | F | F | -0.4567 | |
| 5 | R | F | -2.1655 | |
| 6 | H | F | -2.3013 | |
| 7 | D | F | -2.1296 | |
| 8 | S | F | -1.3396 | |
| 9 | G | F | 0.0206 | |
| 10 | Y | F | 1.3413 | |
| 11 | E | F | 0.5176 | |
| 12 | V | F | 1.0126 | |
| 13 | H | F | -0.6977 | |
| 14 | H | F | -1.6592 | |
| 15 | Q | F | -1.4466 | |
| 16 | K | F | -0.9260 | |
| 17 | L | F | 0.4318 | |
| 18 | V | F | 0.0000 | |
| 19 | F | F | 0.8981 | |
| 20 | F | F | 0.0840 | |
| 21 | A | F | -1.2448 | |
| 22 | E | F | -2.7634 | |
| 23 | D | F | -2.9183 | |
| 24 | V | F | -1.8497 | |
| 25 | G | F | -1.7841 | |
| 26 | S | F | -1.4103 | |
| 27 | N | F | -1.8132 | |
| 28 | K | F | -2.0033 | |
| 29 | G | F | -1.3646 | |
| 30 | A | F | 0.0000 | |
| 31 | I | F | 0.0000 | |
| 32 | I | F | -0.2027 | |
| 33 | G | F | -0.2176 | |
| 34 | L | F | 0.0000 | |
| 35 | M | F | 0.3949 | |
| 36 | V | F | 0.0000 | |
| 37 | G | F | 0.0000 | |
| 38 | G | F | 0.0000 | |
| 39 | V | F | 0.0000 | |
| 40 | V | F | 1.5197 | |
| 41 | I | F | 1.5279 | |
| 42 | A | F | 0.9522 | |
| 1 | D | G | -2.0485 | |
| 2 | A | G | -1.2968 | |
| 3 | E | G | -2.1063 | |
| 4 | F | G | -0.9566 | |
| 5 | R | G | -2.8970 | |
| 6 | H | G | -2.8941 | |
| 7 | D | G | -2.8590 | |
| 8 | S | G | -1.9657 | |
| 9 | G | G | -0.5775 | |
| 10 | Y | G | 1.2811 | |
| 11 | E | G | -0.3152 | |
| 12 | V | G | -0.0448 | |
| 13 | H | G | -1.5877 | |
| 14 | H | G | -2.0266 | |
| 15 | Q | G | -2.2212 | |
| 16 | K | G | -2.1717 | |
| 17 | L | G | 0.0057 | |
| 18 | V | G | 0.6163 | |
| 19 | F | G | 1.6541 | |
| 20 | F | G | 1.1632 | |
| 21 | A | G | -0.7281 | |
| 22 | E | G | -2.3220 | |
| 23 | D | G | -3.0369 | |
| 24 | V | G | -1.5491 | |
| 25 | G | G | -1.5338 | |
| 26 | S | G | -1.2590 | |
| 27 | N | G | -1.5711 | |
| 28 | K | G | -1.0008 | |
| 29 | G | G | 0.0000 | |
| 30 | A | G | -0.1342 | |
| 31 | I | G | 0.3394 | |
| 32 | I | G | 0.0000 | |
| 33 | G | G | 0.0000 | |
| 34 | L | G | 0.0000 | |
| 35 | M | G | 1.2774 | |
| 36 | V | G | 0.0000 | |
| 37 | G | G | 0.0000 | |
| 38 | G | G | 1.5032 | |
| 39 | V | G | 2.6099 | |
| 40 | V | G | 2.5499 | |
| 41 | I | G | 0.0000 | |
| 42 | A | G | 0.8132 | |
| 1 | G | H | 0.2332 | |
| 2 | Y | H | 1.5743 | |
| 3 | E | H | 0.3192 | |
| 4 | V | H | 0.8027 | |
| 5 | H | H | -0.7111 | |
| 6 | H | H | -1.5267 | |
| 7 | Q | H | -1.7289 | |
| 8 | K | H | -0.6397 | |
| 9 | L | H | 0.0000 | |
| 10 | V | H | 1.0149 | |
| 11 | F | H | 1.4386 | |
| 12 | F | H | 1.0750 | |
| 13 | A | H | -0.4350 | |
| 14 | E | H | -2.1782 | |
| 15 | D | H | -2.6836 | |
| 16 | V | H | -1.4537 | |
| 17 | G | H | -1.7232 | |
| 18 | S | H | -1.7954 | |
| 19 | N | H | -2.0916 | |
| 20 | K | H | -1.7404 | |
| 21 | G | H | -1.2597 | |
| 22 | A | H | -0.6959 | |
| 23 | I | H | 0.0000 | |
| 24 | I | H | -0.1238 | |
| 25 | G | H | -0.0853 | |
| 26 | L | H | 0.0000 | |
| 27 | M | H | 0.0000 | |
| 28 | V | H | 0.0000 | |
| 29 | G | H | 0.0000 | |
| 30 | G | H | 0.0000 | |
| 31 | V | H | 0.0000 | |
| 32 | V | H | 0.9550 | |
| 33 | I | H | 1.0868 | |
| 34 | A | H | 0.2972 |