Project name: 5c8962398cc14c8

Status: done

Started: 2025-07-17 23:51:06
Settings
Chain sequence(s) A: QVQLQQSGSELKKPGASVKVSCKASGYTFTNYGVNWIKQAPGQGLQWMGWINPNTGEPTFDDDFKGRFAFSLDTSVSTAYLQISSLKADDTAVYFCSRSRGKNEAWFAYWGQGTLVTVSS
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:40)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:41)
Show buried residues

Minimal score value
-3.643
Maximal score value
0.8314
Average score
-0.7537
Total score value
-90.4451

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q A -1.4482
2 V A -0.8292
3 Q A -1.6654
4 L A 0.0000
5 Q A -2.1716
6 Q A -1.4510
7 S A -1.0886
8 G A -0.8736
9 S A -0.0264
11 E A 0.0715
12 L A 0.8314
13 K A -0.9354
14 K A -2.1689
15 P A -2.1879
16 G A -1.5597
17 A A -1.0914
18 S A -1.2291
19 V A 0.0000
20 K A -1.4217
21 V A 0.0000
22 S A -0.8965
23 C A 0.0000
24 K A -1.6230
25 A A 0.0000
26 S A -1.0957
27 G A -0.9949
28 Y A -0.4596
29 T A -0.2552
30 F A 0.0000
35 T A -0.8691
36 N A -1.1857
37 Y A -0.8765
38 G A -0.7137
39 V A 0.0000
40 N A 0.0000
41 W A 0.0000
42 I A 0.0000
43 K A 0.0207
44 Q A -0.3035
45 A A -0.9052
46 P A -1.0839
47 G A -1.1692
48 Q A -1.5770
49 G A -0.6418
50 L A 0.7548
51 Q A -0.2523
52 W A 0.1385
53 M A 0.0000
54 G A 0.0000
55 W A 0.0238
56 I A 0.0000
57 N A -0.9904
58 P A 0.0000
59 N A -1.6807
62 T A -1.1172
63 G A -1.1589
64 E A -1.3487
65 P A -0.5955
66 T A -0.7791
67 F A -1.4242
68 D A -2.5911
69 D A -3.6430
70 D A -3.4965
71 F A 0.0000
72 K A -3.2243
74 G A -1.9277
75 R A -1.4845
76 F A 0.0000
77 A A -0.6977
78 F A 0.0000
79 S A -0.3346
80 L A -0.2600
81 D A -0.3666
82 T A -0.3751
83 S A 0.1330
84 V A 0.6045
85 S A -0.0679
86 T A 0.0000
87 A A 0.0000
88 Y A -0.3747
89 L A 0.0000
90 Q A -1.0534
91 I A 0.0000
92 S A -1.0775
93 S A -1.2379
94 L A 0.0000
95 K A -2.8534
96 A A -2.0891
97 D A -2.3892
98 D A 0.0000
99 T A -0.7592
100 A A 0.0000
101 V A 0.4964
102 Y A 0.0000
103 F A 0.1954
104 C A 0.0000
105 S A 0.0000
106 R A 0.0000
107 S A -0.9550
108 R A -2.1656
109 G A -2.4881
110 K A -3.2009
111 N A -3.1053
112 E A -2.8981
113 A A -1.1690
114 W A 0.1899
115 F A 0.7409
116 A A 0.2209
117 Y A 0.1724
118 W A 0.1549
119 G A -1.0329
120 Q A -1.3875
121 G A -0.5473
122 T A 0.0000
123 L A 0.6762
124 V A 0.0000
125 T A -0.1678
126 V A 0.0000
127 S A -1.1299
128 S A -1.1739
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018