| Chain sequence(s) |
A: AVQLVDSGGGLVQPGGSLRLSCVASGSFYSINRMGWYRQAPGKQRELVADITSGGGTNYADSVKGRFTISRDNAKNTVYLQMTSLKPEDTAVYYCNAGVRIQWSSNNMGHWGKGTLVTVSS
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:09)
[INFO] Main: Simulation completed successfully. (00:01:10)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | A | A | -0.2722 | |
| 2 | V | A | -0.3189 | |
| 3 | Q | A | -1.0105 | |
| 4 | L | A | 0.0000 | |
| 5 | V | A | 0.6128 | |
| 6 | D | A | 0.0000 | |
| 7 | S | A | -0.1407 | |
| 8 | G | A | -0.5081 | |
| 9 | G | A | 0.3673 | |
| 10 | G | A | 0.7377 | |
| 11 | L | A | 1.3119 | |
| 12 | V | A | 0.0000 | |
| 13 | Q | A | -1.3684 | |
| 14 | P | A | -1.5393 | |
| 15 | G | A | -1.3475 | |
| 16 | G | A | -0.8797 | |
| 17 | S | A | -1.1346 | |
| 18 | L | A | -1.1233 | |
| 19 | R | A | -2.3935 | |
| 20 | L | A | 0.0000 | |
| 21 | S | A | -0.3627 | |
| 22 | C | A | 0.0000 | |
| 23 | V | A | 0.3656 | |
| 24 | A | A | 0.0000 | |
| 25 | S | A | -0.5184 | |
| 26 | G | A | -0.6019 | |
| 27 | S | A | -0.2605 | |
| 28 | F | A | 0.5905 | |
| 29 | Y | A | 0.8027 | |
| 30 | S | A | -0.1942 | |
| 31 | I | A | 0.0000 | |
| 32 | N | A | -1.6541 | |
| 33 | R | A | -2.1406 | |
| 34 | M | A | 0.0000 | |
| 35 | G | A | 0.0000 | |
| 36 | W | A | 0.0000 | |
| 37 | Y | A | -0.2035 | |
| 38 | R | A | 0.0000 | |
| 39 | Q | A | -1.8299 | |
| 40 | A | A | -1.7260 | |
| 41 | P | A | -1.5503 | |
| 42 | G | A | -1.8862 | |
| 43 | K | A | -3.1820 | |
| 44 | Q | A | -3.2054 | |
| 45 | R | A | -2.8786 | |
| 46 | E | A | -2.3250 | |
| 47 | L | A | -0.8137 | |
| 48 | V | A | 0.0000 | |
| 49 | A | A | 0.0000 | |
| 50 | D | A | 0.0000 | |
| 51 | I | A | 0.0000 | |
| 52 | T | A | -1.4124 | |
| 53 | S | A | -1.4593 | |
| 54 | G | A | -1.1984 | |
| 55 | G | A | -1.3207 | |
| 56 | G | A | -1.0440 | |
| 57 | T | A | -0.9021 | |
| 58 | N | A | -1.1259 | |
| 59 | Y | A | -1.1431 | |
| 60 | A | A | -1.4914 | |
| 61 | D | A | -2.5436 | |
| 62 | S | A | -1.6315 | |
| 63 | V | A | 0.0000 | |
| 64 | K | A | -2.7261 | |
| 65 | G | A | -1.7112 | |
| 66 | R | A | -1.6731 | |
| 67 | F | A | 0.0000 | |
| 68 | T | A | -1.2015 | |
| 69 | I | A | 0.0000 | |
| 70 | S | A | -0.6986 | |
| 71 | R | A | -1.0631 | |
| 72 | D | A | -1.5702 | |
| 73 | N | A | -2.0175 | |
| 74 | A | A | -1.5090 | |
| 75 | K | A | -2.1334 | |
| 76 | N | A | -1.5163 | |
| 77 | T | A | 0.0000 | |
| 78 | V | A | 0.0000 | |
| 79 | Y | A | -0.6597 | |
| 80 | L | A | 0.0000 | |
| 81 | Q | A | -2.0679 | |
| 82 | M | A | 0.0000 | |
| 83 | T | A | -1.1577 | |
| 84 | S | A | -0.9921 | |
| 85 | L | A | 0.0000 | |
| 86 | K | A | -2.2478 | |
| 87 | P | A | -1.8314 | |
| 88 | E | A | -2.3483 | |
| 89 | D | A | 0.0000 | |
| 90 | T | A | -0.4807 | |
| 91 | A | A | 0.0000 | |
| 92 | V | A | 0.5694 | |
| 93 | Y | A | 0.0000 | |
| 94 | Y | A | -0.0070 | |
| 95 | C | A | 0.0000 | |
| 96 | N | A | -0.3735 | |
| 97 | A | A | 0.0000 | |
| 98 | G | A | -1.2059 | |
| 99 | V | A | 0.0000 | |
| 100 | R | A | -0.9626 | |
| 101 | I | A | 0.0165 | |
| 102 | Q | A | -0.5322 | |
| 103 | W | A | 0.4858 | |
| 104 | S | A | -0.3202 | |
| 105 | S | A | -0.7690 | |
| 106 | N | A | -1.6407 | |
| 107 | N | A | -1.5367 | |
| 108 | M | A | -0.3368 | |
| 109 | G | A | -0.6348 | |
| 110 | H | A | -0.1920 | |
| 111 | W | A | 0.1031 | |
| 112 | G | A | -0.4474 | |
| 113 | K | A | -1.3001 | |
| 114 | G | A | 0.0000 | |
| 115 | T | A | 0.4624 | |
| 116 | L | A | 1.5933 | |
| 117 | V | A | 0.0000 | |
| 118 | T | A | 0.3233 | |
| 119 | V | A | 0.0000 | |
| 120 | S | A | -0.8889 |