Project name: 2.P2D11-1.pdb

Status: done

Started: 2026-03-19 12:24:53
Settings
Chain sequence(s) H: QVQLVESGGGLVQAGGSLRLSCAASGRLFLTYAMGWFRQAPGKEREFVTGISWSGDNTYYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCAAHQGLLHGTRWSSPFEYNYWGQGTQVTVSS
input PDB
Selected Chain(s) H
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with H chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:26)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:27)
Show buried residues

Minimal score value
-3.1402
Maximal score value
1.5357
Average score
-0.6019
Total score value
-76.4468

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q H -1.8268
2 V H 0.0000
3 Q H -1.3083
4 L H 0.0000
5 V H 0.9634
6 E H 0.0000
7 S H -0.4324
8 G H -0.8870
9 G H -0.4726
11 G H 0.1485
12 L H 1.1718
13 V H 0.0918
14 Q H -1.2401
15 A H -1.4874
16 G H -1.3622
17 G H -0.8995
18 S H -1.0050
19 L H -0.4549
20 R H -1.2694
21 L H 0.0000
22 S H -0.1813
23 C H 0.0000
24 A H -0.2702
25 A H 0.0000
26 S H -1.4473
27 G H -1.9971
28 R H -2.0329
29 L H -0.9162
30 F H 0.0000
35 L H 0.6459
36 T H 0.5028
37 Y H 0.0000
38 A H 0.3003
39 M H 0.0000
40 G H 0.0000
41 W H 0.0000
42 F H 0.0000
43 R H 0.0000
44 Q H -1.5022
45 A H -1.5933
46 P H -1.2765
47 G H -1.8441
48 K H -3.0390
49 E H -3.1402
50 R H -2.0030
51 E H -1.3345
52 F H -0.2395
53 V H 0.0000
54 T H 0.0000
55 G H 0.1211
56 I H 0.0000
57 S H -0.2599
58 W H 0.3002
59 S H -0.4856
62 G H -1.1364
63 D H -2.1289
64 N H -1.3249
65 T H -0.1814
66 Y H 0.4379
67 Y H -0.3944
68 A H -1.1192
69 D H -2.4237
70 S H -1.7914
71 V H 0.0000
72 K H -2.4982
74 G H -1.8007
75 R H -1.7167
76 F H 0.0000
77 T H -0.5890
78 I H 0.0000
79 S H -0.5574
80 R H -0.8089
81 D H -1.1406
82 N H -0.8827
83 A H -1.0786
84 K H -2.2157
85 N H -1.5040
86 T H -0.7982
87 V H 0.0000
88 Y H -0.3034
89 L H 0.0000
90 Q H -0.8541
91 M H 0.0000
92 N H -1.2695
93 S H -1.2470
94 L H 0.0000
95 K H -2.5273
96 P H -1.9497
97 E H -2.3861
98 D H 0.0000
99 T H -0.7995
100 A H 0.0000
101 V H -0.1341
102 Y H 0.0000
103 Y H 0.0574
104 C H 0.0000
105 A H 0.0000
106 A H 0.0000
107 H H 0.0000
108 Q H -0.5280
109 G H -0.1046
110 L H 1.1452
111 L H 0.1814
111A H H -0.5996
111B G H -0.6774
111C T H -1.0688
112D R H -1.6120
112C W H -0.4858
112B S H -0.1953
112A S H 0.2101
112 P H 0.5198
113 F H 1.5357
114 E H 0.1992
115 Y H 0.0000
116 N H -1.0208
117 Y H -0.7065
118 W H -0.0442
119 G H -0.1141
120 Q H -0.8498
121 G H -0.3443
122 T H -0.4541
123 Q H -0.5034
124 V H 0.0000
125 T H -0.1856
126 V H 0.0000
127 S H -0.8085
128 S H -0.9064
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018