| Chain sequence(s) |
H: QVQLQQPGTELVKPGASVKLSCKASGYTFTSYWMHWLRQRPGQGLEWIGNINPNNGGTKYNEKFKSKATLTVDKSSSTAYMQLSSLTSEDSAVYYCASPAYWGQGTLVTVSA
L: DIQMTQSPSSLSASLGERVSLTCRASQEISGYLNWLQQKPDGTIKRLIYAASILDSGVPKRFSGSRSGSDYSLTISSLESEDFADYYCLQYASYPWTFGGGTKLEIK input PDB |
| Selected Chain(s) | H,L |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:50)
[INFO] Main: Simulation completed successfully. (00:01:51)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | H | -1.5537 | |
| 2 | V | H | -0.9900 | |
| 3 | Q | H | -1.9252 | |
| 4 | L | H | 0.0000 | |
| 5 | Q | H | -2.1564 | |
| 6 | Q | H | 0.0000 | |
| 7 | P | H | -0.9248 | |
| 8 | G | H | -0.8382 | |
| 9 | T | H | -0.0570 | |
| 11 | E | H | -0.1067 | |
| 12 | L | H | 0.9973 | |
| 13 | V | H | -0.1496 | |
| 14 | K | H | -1.5185 | |
| 15 | P | H | -1.2369 | |
| 16 | G | H | -1.0618 | |
| 17 | A | H | -0.8468 | |
| 18 | S | H | -1.0607 | |
| 19 | V | H | 0.0000 | |
| 20 | K | H | -1.9901 | |
| 21 | L | H | 0.0000 | |
| 22 | S | H | -0.8883 | |
| 23 | C | H | 0.0000 | |
| 24 | K | H | -1.8543 | |
| 25 | A | H | 0.0000 | |
| 26 | S | H | -1.3285 | |
| 27 | G | H | -1.0628 | |
| 28 | Y | H | -0.2920 | |
| 29 | T | H | 0.0918 | |
| 30 | F | H | 0.0000 | |
| 35 | T | H | -0.7597 | |
| 36 | S | H | 0.1674 | |
| 37 | Y | H | 1.0842 | |
| 38 | W | H | 0.6379 | |
| 39 | M | H | 0.0000 | |
| 40 | H | H | 0.0000 | |
| 41 | W | H | 0.0000 | |
| 42 | L | H | 0.0000 | |
| 43 | R | H | 0.0000 | |
| 44 | Q | H | -0.7986 | |
| 45 | R | H | -1.4044 | |
| 46 | P | H | -1.0305 | |
| 47 | G | H | -1.3504 | |
| 48 | Q | H | -1.9055 | |
| 49 | G | H | -1.2113 | |
| 50 | L | H | 0.0000 | |
| 51 | E | H | -0.8019 | |
| 52 | W | H | 0.0000 | |
| 53 | I | H | 0.0000 | |
| 54 | G | H | 0.0000 | |
| 55 | N | H | 0.0000 | |
| 56 | I | H | 0.0000 | |
| 57 | N | H | -0.8171 | |
| 58 | P | H | 0.0000 | |
| 59 | N | H | -2.1332 | |
| 62 | N | H | -2.2634 | |
| 63 | G | H | -1.5133 | |
| 64 | G | H | -1.1618 | |
| 65 | T | H | -0.7868 | |
| 66 | K | H | -1.3307 | |
| 67 | Y | H | -1.4976 | |
| 68 | N | H | -2.2118 | |
| 69 | E | H | -3.3287 | |
| 70 | K | H | -3.1808 | |
| 71 | F | H | 0.0000 | |
| 72 | K | H | -3.1047 | |
| 74 | S | H | -1.7641 | |
| 75 | K | H | -1.4785 | |
| 76 | A | H | 0.0000 | |
| 77 | T | H | -0.7685 | |
| 78 | L | H | 0.0000 | |
| 79 | T | H | -0.4680 | |
| 80 | V | H | -0.9648 | |
| 81 | D | H | -1.4642 | |
| 82 | K | H | -2.4326 | |
| 83 | S | H | -1.2220 | |
| 84 | S | H | -1.0679 | |
| 85 | S | H | -1.2311 | |
| 86 | T | H | 0.0000 | |
| 87 | A | H | 0.0000 | |
| 88 | Y | H | -0.4698 | |
| 89 | M | H | 0.0000 | |
| 90 | Q | H | -1.2890 | |
| 91 | L | H | 0.0000 | |
| 92 | S | H | -0.8450 | |
| 93 | S | H | -0.7799 | |
| 94 | L | H | 0.0000 | |
| 95 | T | H | -1.2609 | |
| 96 | S | H | -1.4168 | |
| 97 | E | H | -2.0223 | |
| 98 | D | H | 0.0000 | |
| 99 | S | H | -0.6024 | |
| 100 | A | H | 0.0000 | |
| 101 | V | H | 0.0534 | |
| 102 | Y | H | 0.0000 | |
| 103 | Y | H | 0.0000 | |
| 104 | C | H | 0.0000 | |
| 105 | A | H | 0.0000 | |
| 106 | S | H | 0.0000 | |
| 107 | P | H | 0.5048 | |
| 116 | A | H | 0.2277 | |
| 117 | Y | H | 0.4548 | |
| 118 | W | H | -0.1847 | |
| 119 | G | H | 0.0000 | |
| 120 | Q | H | -1.3450 | |
| 121 | G | H | 0.0000 | |
| 122 | T | H | 0.0000 | |
| 123 | L | H | 0.2718 | |
| 124 | V | H | 0.0000 | |
| 125 | T | H | 0.0260 | |
| 126 | V | H | 0.0000 | |
| 127 | S | H | -0.4406 | |
| 128 | A | H | -0.3838 | |
| 1 | D | L | -2.1100 | |
| 2 | I | L | 0.0000 | |
| 3 | Q | L | -2.2453 | |
| 4 | M | L | 0.0000 | |
| 5 | T | L | -1.3503 | |
| 6 | Q | L | -1.0767 | |
| 7 | S | L | -0.7512 | |
| 8 | P | L | -0.5201 | |
| 9 | S | L | -0.6870 | |
| 10 | S | L | -0.7676 | |
| 11 | L | L | -0.4875 | |
| 12 | S | L | -0.8781 | |
| 13 | A | L | 0.0000 | |
| 14 | S | L | -1.2706 | |
| 15 | L | L | -0.6439 | |
| 16 | G | L | -1.5262 | |
| 17 | E | L | -2.6533 | |
| 18 | R | L | -2.6320 | |
| 19 | V | L | 0.0000 | |
| 20 | S | L | -0.6356 | |
| 21 | L | L | 0.0000 | |
| 22 | T | L | -0.8357 | |
| 23 | C | L | 0.0000 | |
| 24 | R | L | -2.8682 | |
| 25 | A | L | 0.0000 | |
| 26 | S | L | -2.3002 | |
| 27 | Q | L | -2.8049 | |
| 28 | E | L | -2.6559 | |
| 29 | I | L | 0.0000 | |
| 36 | S | L | -0.6410 | |
| 37 | G | L | 0.0336 | |
| 38 | Y | L | 1.0481 | |
| 39 | L | L | 0.0000 | |
| 40 | N | L | 0.0000 | |
| 41 | W | L | 0.0000 | |
| 42 | L | L | 0.0000 | |
| 43 | Q | L | 0.0000 | |
| 44 | Q | L | 0.0000 | |
| 45 | K | L | -1.4331 | |
| 46 | P | L | -1.2842 | |
| 47 | D | L | -2.2003 | |
| 48 | G | L | -1.4435 | |
| 49 | T | L | -1.1929 | |
| 50 | I | L | 0.0000 | |
| 51 | K | L | -0.7233 | |
| 52 | R | L | -0.3550 | |
| 53 | L | L | 0.0000 | |
| 54 | I | L | 0.0000 | |
| 55 | Y | L | 1.1120 | |
| 56 | A | L | 0.9122 | |
| 57 | A | L | 0.0000 | |
| 65 | S | L | 0.4360 | |
| 66 | I | L | 1.6617 | |
| 67 | L | L | 0.5041 | |
| 68 | D | L | -0.1557 | |
| 69 | S | L | -0.3187 | |
| 70 | G | L | -0.8201 | |
| 71 | V | L | 0.0000 | |
| 72 | P | L | -1.1209 | |
| 74 | K | L | -1.9177 | |
| 75 | R | L | -1.5194 | |
| 76 | F | L | 0.0000 | |
| 77 | S | L | -0.4016 | |
| 78 | G | L | -0.0810 | |
| 79 | S | L | -0.6593 | |
| 80 | R | L | -1.5167 | |
| 83 | S | L | -1.2100 | |
| 84 | G | L | -1.4252 | |
| 85 | S | L | -1.9833 | |
| 86 | D | L | -1.8718 | |
| 87 | Y | L | 0.0000 | |
| 88 | S | L | -0.8394 | |
| 89 | L | L | 0.0000 | |
| 90 | T | L | -0.6395 | |
| 91 | I | L | 0.0000 | |
| 92 | S | L | -1.7020 | |
| 93 | S | L | -1.7212 | |
| 94 | L | L | 0.0000 | |
| 95 | E | L | -1.7417 | |
| 96 | S | L | -1.2603 | |
| 97 | E | L | -1.9830 | |
| 98 | D | L | 0.0000 | |
| 99 | F | L | -0.5643 | |
| 100 | A | L | 0.0000 | |
| 101 | D | L | -0.8229 | |
| 102 | Y | L | 0.0000 | |
| 103 | Y | L | 0.0000 | |
| 104 | C | L | 0.0000 | |
| 105 | L | L | 0.0000 | |
| 106 | Q | L | 0.0000 | |
| 107 | Y | L | 0.8520 | |
| 108 | A | L | 0.3984 | |
| 109 | S | L | 0.3006 | |
| 114 | Y | L | 0.2509 | |
| 115 | P | L | -0.5056 | |
| 116 | W | L | 0.0678 | |
| 117 | T | L | -0.4211 | |
| 118 | F | L | -0.2225 | |
| 119 | G | L | 0.0000 | |
| 120 | G | L | -1.0061 | |
| 121 | G | L | 0.0000 | |
| 122 | T | L | 0.0000 | |
| 123 | K | L | -1.1027 | |
| 124 | L | L | 0.0000 | |
| 125 | E | L | -1.1294 | |
| 126 | I | L | -0.3353 | |
| 127 | K | L | -1.5513 |