Project name: REST_test

Status: done

Started: 2025-06-01 18:14:25
Settings
Chain sequence(s) A: MGSTWGSPGWVRLALCLTGLVLSLYALHVKAARARDRDYRALCDVGTAISCSRVFSSRWGRGFGLVEHVLGQDSILNQSNSIFGCIFYTLQLLLGCLRTRWASVLMLLSSLVSLAGSVYLAWILFFVLYDFCIVCITTYAINVSLMWLSFRKVQEPQGKAKRH
input PDB
Selected Chain(s) A
Distance of aggregation 5 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Mutated residues LV70A
Energy difference between WT (input) and mutated protein (by FoldX) 2.92593 kcal/mol

CAUTION: Your mutation/s can destabilize the protein structure

Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       FoldX:    Building mutant model                                                       (00:01:59)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:02:04)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:02:58)
[INFO]       Main:     Simulation completed successfully.                                          (00:03:00)
Show buried residues

Minimal score value
-2.5111
Maximal score value
2.2937
Average score
0.0712
Total score value
11.6087

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 M A 0.9691
2 G A -0.3146
3 S A -0.3099
4 T A 0.1068
5 W A 1.1367
6 G A -0.1587
7 S A -0.2832
8 P A -0.1020
9 G A 0.0378
10 W A 1.4390
11 V A 1.7856
12 R A 0.0000
13 L A 0.4950
14 A A 0.1453
15 L A 0.2259
16 C A 0.0000
17 L A 0.7711
18 T A 0.0938
19 G A 0.0000
20 L A 0.7124
21 V A 1.8716
22 L A 0.5739
23 S A 0.0000
24 L A 0.7902
25 Y A 0.2990
26 A A 0.0000
27 L A 0.3008
28 H A -0.8791
29 V A 0.0000
30 K A -0.2614
31 A A -0.0271
32 A A -0.0740
33 R A -0.6828
34 A A -0.3642
35 R A -2.1597
36 D A -2.5111
37 R A -2.4896
38 D A -2.0695
39 Y A -0.3710
40 R A -1.7926
41 A A 0.0000
42 L A 1.5477
43 C A 0.0000
44 D A 0.0000
45 V A 1.7299
46 G A 0.1089
47 T A -0.1036
48 A A 0.1137
49 I A 0.5483
50 S A 0.0429
51 C A 0.0000
52 S A 0.0000
53 R A -1.0297
54 V A 0.0211
55 F A 0.1910
56 S A -0.1814
57 S A -0.3970
58 R A -1.7959
59 W A 0.0041
60 G A -0.2946
61 R A -1.8558
62 G A 0.0000
63 F A 0.5203
64 G A 0.3198
65 L A 1.2817
66 V A 0.0000
67 E A -0.5636
68 H A -0.7131
69 V A 1.8844
70 V A 1.8953 mutated: LV70A
71 G A -0.1264
72 Q A -1.5758
73 D A -2.0099
74 S A 0.0140
75 I A 2.1825
76 L A 1.3386
77 N A 0.0000
78 Q A -0.6194
79 S A -0.4460
80 N A -0.1884
81 S A 0.0239
82 I A 0.5583
83 F A 0.5377
84 G A 0.0288
85 C A 0.4387
86 I A 2.0699
87 F A 0.5918
88 Y A 0.0000
89 T A 0.0390
90 L A 0.5407
91 Q A 0.0000
92 L A 0.5278
93 L A 1.5936
94 L A 0.0000
95 G A 0.0053
96 C A 0.2181
97 L A 0.0367
98 R A -1.8125
99 T A -0.6768
100 R A -1.6299
101 W A 0.8494
102 A A 0.0000
103 S A 0.0000
104 V A 0.4513
105 L A 0.6706
106 M A 0.0000
107 L A 0.3951
108 L A 1.3193
109 S A 0.1995
110 S A 0.0000
111 L A 1.0755
112 V A 1.9042
113 S A 0.3366
114 L A 0.2631
115 A A 0.0919
116 G A -0.0617
117 S A 0.0000
118 V A 1.8308
119 Y A 0.6824
120 L A 0.2846
121 A A 0.2631
122 W A 1.1885
123 I A 0.0000
124 L A 0.0000
125 F A 1.7978
126 F A 2.2937
127 V A 1.0281
128 L A 0.5416
129 Y A 1.4836
130 D A 0.0000
131 F A 1.8345
132 C A 0.0000
133 I A 0.7518
134 V A 0.0000
135 C A 0.0000
136 I A 0.5792
137 T A 0.0678
138 T A 0.0104
139 Y A 0.1600
140 A A 0.0857
141 I A 0.0000
142 N A 0.0000
143 V A 0.9683
144 S A 0.0906
145 L A 0.0000
146 M A 0.0000
147 W A 1.2289
148 L A 0.4465
149 S A 0.0000
150 F A 0.9096
151 R A -1.6941
152 K A -0.5947
153 V A 0.4962
154 Q A -1.3661
155 E A -1.9783
156 P A -0.7735
157 Q A -1.3259
158 G A -0.9755
159 K A -1.7710
160 A A -0.5507
161 K A -2.0299
162 R A -2.3465
163 H A -1.3418
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018