| Chain sequence(s) |
A: QVQLVESGGGLVQAGGSLRLSCAASGFPVAHKTMYWYRQAPGKERDWVAAIRSTGKYTYYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCYVTVGQEYIGQGTQVTVS
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:37)
[INFO] Main: Simulation completed successfully. (00:01:38)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | A | -1.5340 | |
| 2 | V | A | -1.1277 | |
| 3 | Q | A | -0.9583 | |
| 4 | L | A | 0.0000 | |
| 5 | V | A | 0.5917 | |
| 6 | E | A | 0.0000 | |
| 7 | S | A | -0.7304 | |
| 8 | G | A | -1.1894 | |
| 9 | G | A | -0.8142 | |
| 10 | G | A | -0.0933 | |
| 11 | L | A | 0.9735 | |
| 12 | V | A | 0.0000 | |
| 13 | Q | A | -1.3337 | |
| 14 | A | A | -1.4819 | |
| 15 | G | A | -1.3742 | |
| 16 | G | A | -0.9191 | |
| 17 | S | A | -1.2247 | |
| 18 | L | A | -0.9332 | |
| 19 | R | A | -2.1367 | |
| 20 | L | A | 0.0000 | |
| 21 | S | A | -0.4817 | |
| 22 | C | A | 0.0000 | |
| 23 | A | A | -0.3077 | |
| 24 | A | A | 0.0000 | |
| 25 | S | A | -0.8515 | |
| 26 | G | A | -1.1080 | |
| 27 | F | A | 0.0000 | |
| 28 | P | A | -1.2021 | |
| 29 | V | A | 0.0000 | |
| 30 | A | A | -1.4440 | |
| 31 | H | A | -1.5788 | |
| 32 | K | A | -1.1328 | |
| 33 | T | A | -0.7001 | |
| 34 | M | A | 0.0000 | |
| 35 | Y | A | 0.6192 | |
| 36 | W | A | 0.0000 | |
| 37 | Y | A | -0.0238 | |
| 38 | R | A | -1.3063 | |
| 39 | Q | A | -2.1749 | |
| 40 | A | A | -2.0591 | |
| 41 | P | A | -1.4103 | |
| 42 | G | A | -1.9299 | |
| 43 | K | A | -3.3003 | |
| 44 | E | A | -3.6406 | |
| 45 | R | A | -2.9647 | |
| 46 | D | A | -1.9688 | |
| 47 | W | A | -0.6013 | |
| 48 | V | A | 0.0000 | |
| 49 | A | A | 0.0000 | |
| 50 | A | A | 0.0000 | |
| 51 | I | A | 0.0000 | |
| 52 | R | A | -1.3924 | |
| 53 | S | A | -1.3970 | |
| 54 | T | A | -1.3303 | |
| 55 | G | A | -1.6246 | |
| 56 | K | A | -1.7424 | |
| 57 | Y | A | -0.4541 | |
| 58 | T | A | 0.0419 | |
| 59 | Y | A | 0.4976 | |
| 60 | Y | A | -0.4505 | |
| 61 | A | A | -1.1878 | |
| 62 | D | A | -2.3598 | |
| 63 | S | A | -1.8019 | |
| 64 | V | A | 0.0000 | |
| 65 | K | A | -2.5328 | |
| 66 | G | A | -1.7916 | |
| 67 | R | A | -1.5066 | |
| 68 | F | A | 0.0000 | |
| 69 | T | A | -0.7688 | |
| 70 | I | A | 0.0000 | |
| 71 | S | A | -0.8505 | |
| 72 | R | A | -1.3387 | |
| 73 | D | A | -1.9751 | |
| 74 | N | A | -2.4800 | |
| 75 | A | A | -1.7410 | |
| 76 | K | A | -2.4776 | |
| 77 | N | A | -1.8665 | |
| 78 | T | A | 0.0000 | |
| 79 | V | A | 0.0000 | |
| 80 | Y | A | -0.6819 | |
| 81 | L | A | 0.0000 | |
| 82 | Q | A | -1.2604 | |
| 83 | M | A | 0.0000 | |
| 84 | N | A | -1.3818 | |
| 85 | S | A | -1.2216 | |
| 86 | L | A | 0.0000 | |
| 87 | K | A | -2.4527 | |
| 88 | P | A | -1.9774 | |
| 89 | E | A | -2.3856 | |
| 90 | D | A | 0.0000 | |
| 91 | T | A | -0.9853 | |
| 92 | A | A | 0.0000 | |
| 93 | V | A | -0.4972 | |
| 94 | Y | A | 0.0000 | |
| 95 | Y | A | 0.1248 | |
| 96 | C | A | 0.0000 | |
| 97 | Y | A | 0.4900 | |
| 98 | V | A | 0.0000 | |
| 99 | T | A | -0.8882 | |
| 100 | V | A | -0.9336 | |
| 101 | G | A | -1.2415 | |
| 102 | Q | A | -2.1307 | |
| 103 | E | A | -1.9169 | |
| 104 | Y | A | -0.4229 | |
| 105 | I | A | 1.0772 | |
| 106 | G | A | 0.3784 | |
| 107 | Q | A | -0.7771 | |
| 108 | G | A | -0.3709 | |
| 109 | T | A | -0.7618 | |
| 110 | Q | A | -1.1155 | |
| 111 | V | A | 0.0000 | |
| 112 | T | A | -0.3251 | |
| 113 | V | A | 0.0000 | |
| 114 | S | A | -0.8002 |