Project name: query_structure

Status: done

Started: 2026-03-17 00:36:47
Settings
Chain sequence(s) A: QVQLVESGGGLVQAGGSLRLSCAASGFPVAHKTMYWYRQAPGKERDWVAAIRSTGKYTYYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCYVTVGQEYIGQGTQVTVS
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:37)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:38)
Show buried residues

Minimal score value
-3.6406
Maximal score value
1.0772
Average score
-0.867
Total score value
-98.8415

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q A -1.5340
2 V A -1.1277
3 Q A -0.9583
4 L A 0.0000
5 V A 0.5917
6 E A 0.0000
7 S A -0.7304
8 G A -1.1894
9 G A -0.8142
10 G A -0.0933
11 L A 0.9735
12 V A 0.0000
13 Q A -1.3337
14 A A -1.4819
15 G A -1.3742
16 G A -0.9191
17 S A -1.2247
18 L A -0.9332
19 R A -2.1367
20 L A 0.0000
21 S A -0.4817
22 C A 0.0000
23 A A -0.3077
24 A A 0.0000
25 S A -0.8515
26 G A -1.1080
27 F A 0.0000
28 P A -1.2021
29 V A 0.0000
30 A A -1.4440
31 H A -1.5788
32 K A -1.1328
33 T A -0.7001
34 M A 0.0000
35 Y A 0.6192
36 W A 0.0000
37 Y A -0.0238
38 R A -1.3063
39 Q A -2.1749
40 A A -2.0591
41 P A -1.4103
42 G A -1.9299
43 K A -3.3003
44 E A -3.6406
45 R A -2.9647
46 D A -1.9688
47 W A -0.6013
48 V A 0.0000
49 A A 0.0000
50 A A 0.0000
51 I A 0.0000
52 R A -1.3924
53 S A -1.3970
54 T A -1.3303
55 G A -1.6246
56 K A -1.7424
57 Y A -0.4541
58 T A 0.0419
59 Y A 0.4976
60 Y A -0.4505
61 A A -1.1878
62 D A -2.3598
63 S A -1.8019
64 V A 0.0000
65 K A -2.5328
66 G A -1.7916
67 R A -1.5066
68 F A 0.0000
69 T A -0.7688
70 I A 0.0000
71 S A -0.8505
72 R A -1.3387
73 D A -1.9751
74 N A -2.4800
75 A A -1.7410
76 K A -2.4776
77 N A -1.8665
78 T A 0.0000
79 V A 0.0000
80 Y A -0.6819
81 L A 0.0000
82 Q A -1.2604
83 M A 0.0000
84 N A -1.3818
85 S A -1.2216
86 L A 0.0000
87 K A -2.4527
88 P A -1.9774
89 E A -2.3856
90 D A 0.0000
91 T A -0.9853
92 A A 0.0000
93 V A -0.4972
94 Y A 0.0000
95 Y A 0.1248
96 C A 0.0000
97 Y A 0.4900
98 V A 0.0000
99 T A -0.8882
100 V A -0.9336
101 G A -1.2415
102 Q A -2.1307
103 E A -1.9169
104 Y A -0.4229
105 I A 1.0772
106 G A 0.3784
107 Q A -0.7771
108 G A -0.3709
109 T A -0.7618
110 Q A -1.1155
111 V A 0.0000
112 T A -0.3251
113 V A 0.0000
114 S A -0.8002
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018