Project name: 5d7fc0c136bd304

Status: done

Started: 2025-06-03 05:07:56
Settings
Chain sequence(s) H: QVQLVQSGAEVKKPGASVKVSCKVSGFTLTELSIHWVRQAPGKGLEWMGGFDPEDGETIYAQKFQGRVTMTEDTSTDTAYMELTSLRSEDTAVYYCSTIFGVVTNFDNWGQGTLVTVSS
L: DIQMTQSPSSLSASAGDRVTITCRASQAIRNDLGWYQQKPGKAPKRLIYAAFNLQSGVPSRFSGSGSGTEFTLTISSLQPEDLASYYCQQYNRYPWTFGQGTKVEIK
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:02:22)
[INFO]       Main:     Simulation completed successfully.                                          (00:02:24)
Show buried residues

Minimal score value
-3.4948
Maximal score value
2.0852
Average score
-0.6055
Total score value
-136.8515

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q H -1.4162
2 V H -0.9226
3 Q H -1.2014
4 L H 0.0000
5 V H 0.6075
6 Q H 0.0000
7 S H -0.3860
8 G H -0.4283
9 A H 0.2694
11 E H 0.1573
12 V H 1.0155
13 K H -0.8808
14 K H -2.0713
15 P H -1.8257
16 G H -1.4086
17 A H -1.0980
18 S H -1.2043
19 V H 0.0000
20 K H -1.8435
21 V H 0.0000
22 S H -0.3696
23 C H 0.0000
24 K H -0.6065
25 V H 0.0000
26 S H -0.7351
27 G H -0.9739
28 F H -0.7025
29 T H -0.6323
30 L H 0.0000
35 T H -1.0771
36 E H -1.5104
37 L H -0.0238
38 S H 0.0000
39 I H 0.0000
40 H H 0.0000
41 W H 0.0000
42 V H 0.0000
43 R H 0.0000
44 Q H -0.6448
45 A H -1.0660
46 P H -0.9235
47 G H -1.5266
48 K H -2.3298
49 G H -1.5450
50 L H 0.0000
51 E H -0.9647
52 W H 0.0000
53 M H 0.0000
54 G H 0.0000
55 G H 0.0000
56 F H -0.6353
57 D H -1.4513
58 P H -2.0597
59 E H -2.9159
62 D H -3.4948
63 G H -2.6434
64 E H -2.7783
65 T H -0.8915
66 I H -0.3994
67 Y H -0.6993
68 A H 0.0000
69 Q H -2.5996
70 K H -2.6883
71 F H 0.0000
72 Q H -2.2077
74 G H -1.5460
75 R H -1.3796
76 V H 0.0000
77 T H -0.6047
78 M H 0.0000
79 T H -0.2582
80 E H -0.7206
81 D H -1.0248
82 T H -0.7329
83 S H -0.6036
84 T H -0.7248
85 D H -0.9464
86 T H 0.0000
87 A H 0.0000
88 Y H -0.4118
89 M H 0.0000
90 E H -1.1474
91 L H 0.0000
92 T H -0.9182
93 S H -1.0007
94 L H 0.0000
95 R H -2.4053
96 S H -2.0362
97 E H -2.3041
98 D H 0.0000
99 T H -0.6163
100 A H 0.0000
101 V H 0.3935
102 Y H 0.0000
103 Y H 0.0000
104 C H 0.0000
105 S H 0.0000
106 T H 0.0000
107 I H 0.0000
108 F H 2.0852
109 G H 1.3271
110 V H 2.0767
112 V H 1.9232
113 T H 1.1671
114 N H 0.0000
115 F H 0.0000
116 D H -0.1606
117 N H -0.5134
118 W H -0.6249
119 G H 0.0000
120 Q H -1.2982
121 G H -0.4989
122 T H 0.0000
123 L H 0.8381
124 V H 0.0000
125 T H -0.0293
126 V H 0.0000
127 S H -0.9644
128 S H -0.9675
1 D L -2.4571
2 I L 0.0000
3 Q L -2.2426
4 M L 0.0000
5 T L -1.4231
6 Q L 0.0000
7 S L -0.7815
8 P L -0.6535
9 S L -0.9060
10 S L -0.9828
11 L L -0.6715
12 S L -0.8972
13 A L 0.0000
14 S L -1.1294
15 A L -1.0816
16 G L -1.1947
17 D L -1.8930
18 R L -2.2755
19 V L 0.0000
20 T L -0.5887
21 I L 0.0000
22 T L -0.7495
23 C L 0.0000
24 R L -2.5415
25 A L 0.0000
26 S L -1.7210
27 Q L -1.8656
28 A L -1.4004
29 I L 0.0000
36 R L -2.4771
37 N L -1.4319
38 D L 0.0000
39 L L 0.0000
40 G L 0.0000
41 W L 0.0000
42 Y L 0.0000
43 Q L -0.8135
44 Q L 0.0000
45 K L -1.8273
46 P L -1.3268
47 G L -1.7337
48 K L -2.5378
49 A L -1.5602
50 P L 0.0000
51 K L -1.2389
52 R L 0.0000
53 L L 0.0000
54 I L 0.0000
55 Y L 0.9338
56 A L 0.3587
57 A L 0.0000
65 F L 1.7512
66 N L 0.9456
67 L L 0.7910
68 Q L 0.0132
69 S L -0.4078
70 G L -0.5001
71 V L -0.2956
72 P L -0.3554
74 S L -0.4079
75 R L -0.7919
76 F L 0.0000
77 S L 0.1875
78 G L 0.7029
79 S L 0.0747
80 G L -0.8422
83 S L -1.3312
84 G L -1.6646
85 T L -1.7021
86 E L -1.8732
87 F L 0.0000
88 T L -0.3838
89 L L 0.0000
90 T L -0.5921
91 I L 0.0000
92 S L -1.2372
93 S L -1.3295
94 L L 0.0000
95 Q L -1.0950
96 P L -1.1214
97 E L -1.9046
98 D L 0.0000
99 L L -0.7986
100 A L 0.0000
101 S L -1.1056
102 Y L 0.0000
103 Y L 0.0000
104 C L 0.0000
105 Q L 0.0000
106 Q L 0.0000
107 Y L 0.0000
108 N L -0.8577
109 R L -1.2877
114 Y L -0.5745
115 P L -0.8347
116 W L 0.0000
117 T L -0.8172
118 F L -0.4149
119 G L 0.0000
120 Q L -1.6515
121 G L -1.2899
122 T L 0.0000
123 K L -1.7115
124 V L 0.0000
125 E L -1.1073
126 I L -0.1269
127 K L -1.4321
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Laboratory of Theory of Biopolymers 2018