Project name: GGGHKFG20

Status: done

Started: 2026-02-23 05:34:08
Settings
Chain sequence(s) A: GGGHKFG
C: GGGHKFG
B: GGGHKFG
E: GGGHKFG
D: GGGHKFG
G: GGGHKFG
F: GGGHKFG
I: GGGHKFG
H: GGGHKFG
K: GGGHKFG
J: GGGHKFG
M: GGGHKFG
L: GGGHKFG
O: GGGHKFG
N: GGGHKFG
Q: GGGHKFG
P: GGGHKFG
S: GGGHKFG
R: GGGHKFG
T: GGGHKFG
input PDB
Selected Chain(s) A,C,B,E,D,G,F,I,H,K,J,M,L,O,N,Q,P,S,R,T
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:04:06)
[INFO]       Main:     Simulation completed successfully.                                          (00:04:11)
Show buried residues

Minimal score value
-1.9415
Maximal score value
1.3306
Average score
-0.8745
Total score value
-122.4293

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 G A -0.9766
2 G A -1.6244
3 G A -1.6025
4 H A -1.8529
5 K A -1.4665
6 F A 0.5195
7 G A -0.1509
1 G B -1.7650
2 G B -1.6754
3 G B -1.7248
4 H B -1.6030
5 K B -1.7516
6 F B -0.2073
7 G B -0.5839
1 G C -1.3592
2 G C -1.5203
3 G C 0.0000
4 H C -0.6313
5 K C -0.0071
6 F C 1.2873
7 G C 0.4806
1 G D -1.3574
2 G D -1.4799
3 G D -1.2779
4 H D -0.5236
5 K D -0.4774
6 F D 1.3306
7 G D 0.2654
1 G E -1.5271
2 G E -1.5798
3 G E -1.7582
4 H E -1.1498
5 K E -1.1913
6 F E 0.8129
7 G E -0.1038
1 G F -1.6415
2 G F 0.0000
3 G F -1.7248
4 H F -1.4993
5 K F -1.0627
6 F F 0.8603
7 G F -0.0661
1 G G -1.6236
2 G G 0.0000
3 G G -1.9097
4 H G -1.4682
5 K G -1.2568
6 F G 0.7284
7 G G -0.1532
1 G H -1.5312
2 G H 0.0000
3 G H -1.8294
4 H H -1.2274
5 K H -1.5140
6 F H 0.7197
7 G H -0.1288
1 G I -1.3852
2 G I -1.5794
3 G I -1.7830
4 H I -1.1906
5 K I -1.4816
6 F I 0.7381
7 G I -0.1122
1 G J -1.3374
2 G J -1.5918
3 G J -1.7089
4 H J -1.2912
5 K J -1.5938
6 F J 0.7043
7 G J -0.1107
1 G K -1.3178
2 G K 0.0000
3 G K -1.7601
4 H K -1.2500
5 K K -1.5498
6 F K 0.7146
7 G K -0.0983
1 G L -1.2909
2 G L -1.5960
3 G L -1.7503
4 H L -1.1663
5 K L -1.4419
6 F L 0.7772
7 G L -0.0539
1 G M -1.4004
2 G M -1.6836
3 G M -1.8271
4 H M -1.2273
5 K M -1.4813
6 F M 0.7331
7 G M -0.0654
1 G N -1.4333
2 G N -1.6882
3 G N -1.8372
4 H N -1.2869
5 K N -1.5585
6 F N 0.6442
7 G N -0.1357
1 G O -1.4493
2 G O -1.6930
3 G O -1.8403
4 H O -1.5863
5 K O -1.6792
6 F O 0.4811
7 G O -0.2747
1 G P -1.3898
2 G P -1.6564
3 G P -1.9025
4 H P -1.4802
5 K P -1.9415
6 F P -0.2521
7 G P -0.6102
1 G Q -1.2438
2 G Q -1.5944
3 G Q -1.7768
4 H Q -1.2131
5 K Q -1.5943
6 F Q 0.4557
7 G Q -0.3357
1 G R -1.2254
2 G R -1.6314
3 G R -1.6661
4 H R -1.2164
5 K R -1.3350
6 F R 0.7174
7 G R -0.0460
1 G S -1.4288
2 G S -1.5357
3 G S -1.6471
4 H S -1.2005
5 K S -1.2614
6 F S 0.9195
7 G S 0.1276
1 G T -1.5254
2 G T 0.0000
3 G T 0.0000
4 H T -0.9578
5 K T -0.1315
6 F T 1.2813
7 G T 0.2256
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018