Project name: 2G2

Status: done

Started: 2025-06-22 09:55:02
Settings
Chain sequence(s) H: QVQLQQSGAELARPGTSVKVSCKASGYAFTNYLIEWVKQRPGQGLEWIGVISPGSGIINYNEKFKGKATLTADKSSSTAYMQLSSLTSDDSAVYFCAAIDYSGPYAVDDWGQGTSVTVSS
L: DIVMTQSHKFMSTSVGDRVSVTCKASQAVNTAVAWYQQKPGQSPKLLIYSASYGYTGVPDRFTGSGSGTDFTLTISSVQAEDLAVYYCQHHYGVPWTFGGGTKLEIK
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:45)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:47)
Show buried residues

Minimal score value
-3.3968
Maximal score value
1.8633
Average score
-0.5254
Total score value
-119.2682

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q H -1.2993
2 V H -0.6823
3 Q H -1.3890
4 L H 0.0000
5 Q H -1.7061
6 Q H -1.2040
7 S H -0.9553
8 G H -0.7337
9 A H -0.1081
11 E H -0.0219
12 L H 0.7693
13 A H -0.5535
14 R H -1.9704
15 P H -1.7869
16 G H -1.2604
17 T H -1.1006
18 S H -1.0584
19 V H 0.0000
20 K H -1.1179
21 V H 0.0000
22 S H -0.6262
23 C H 0.0000
24 K H -1.3301
25 A H 0.0000
26 S H -0.8828
27 G H -0.8072
28 Y H -0.4038
29 A H -0.3104
30 F H 0.0000
35 T H -1.2027
36 N H -1.0321
37 Y H -0.0837
38 L H 0.4373
39 I H 0.0000
40 E H 0.0000
41 W H 0.0000
42 V H 0.0000
43 K H -0.6664
44 Q H -1.0788
45 R H -1.8420
46 P H -1.2155
47 G H -1.3907
48 Q H -1.9163
49 G H -1.1577
50 L H 0.0000
51 E H -1.0259
52 W H 0.0000
53 I H 0.0000
54 G H 0.0000
55 V H 0.0000
56 I H 0.0000
57 S H 0.1158
58 P H 0.0000
59 G H -0.8448
62 S H -0.1247
63 G H 0.2892
64 I H 1.8633
65 I H 1.1486
66 N H -0.1921
67 Y H -1.1494
68 N H 0.0000
69 E H -3.3968
70 K H -3.1854
71 F H 0.0000
72 K H -3.1466
74 G H -1.9921
75 K H -1.7365
76 A H 0.0000
77 T H -0.6768
78 L H 0.0000
79 T H -0.1434
80 A H -0.8623
81 D H -1.5881
82 K H -2.1975
83 S H -1.2526
84 S H -1.0091
85 S H -1.1476
86 T H 0.0000
87 A H 0.0000
88 Y H -0.2438
89 M H 0.0000
90 Q H -0.9948
91 L H 0.0000
92 S H -0.8523
93 S H -0.9435
94 L H 0.0000
95 T H -1.3894
96 S H -1.5134
97 D H -2.0863
98 D H 0.0000
99 S H -0.7984
100 A H 0.0000
101 V H -0.1177
102 Y H 0.0000
103 F H 0.0000
104 C H 0.0000
105 A H 0.0000
106 A H 0.0000
107 I H 0.0000
108 D H 0.0000
109 Y H 0.7992
110 S H 0.2698
111 G H 0.2003
112 P H 0.0950
113 Y H 0.3357
114 A H 0.0000
115 V H 0.0000
116 D H -0.2965
117 D H -0.6906
118 W H 0.0000
119 G H 0.0000
120 Q H -1.8722
121 G H -1.0194
122 T H 0.0000
123 S H -0.1980
124 V H 0.0000
125 T H -0.2018
126 V H 0.0000
127 S H -0.6601
128 S H -0.7687
1 D L -1.3876
2 I L 0.2101
3 V L 0.9705
4 M L 0.0000
5 T L -0.5271
6 Q L 0.0000
7 S L -1.1304
8 H L -1.3674
9 K L -1.3905
10 F L 0.4762
11 M L 0.0955
12 S L -0.3980
13 T L 0.0000
14 S L -0.7761
15 V L -0.0367
16 G L -0.5677
17 D L -1.5584
18 R L -2.1027
19 V L -1.0356
20 S L -0.4619
21 V L 0.0000
22 T L -0.9773
23 C L 0.0000
24 K L -2.1536
25 A L 0.0000
26 S L -0.7499
27 Q L -1.3471
28 A L -1.0744
29 V L 0.0000
36 N L -1.5246
37 T L -0.7346
38 A L -0.1487
39 V L 0.0000
40 A L 0.0000
41 W L 0.0000
42 Y L 0.0000
43 Q L -0.5740
44 Q L -0.8580
45 K L -1.2439
46 P L -0.9151
47 G L -1.4191
48 Q L -2.0321
49 S L -1.3796
50 P L 0.0000
51 K L -1.0776
52 L L 0.0000
53 L L 0.0000
54 I L 0.0000
55 Y L 0.3979
56 S L 0.1166
57 A L 0.0000
65 S L 0.2382
66 Y L 1.0386
67 G L -0.1166
68 Y L 0.1308
69 T L -0.1411
70 G L -0.6524
71 V L -0.6843
72 P L -1.1876
74 D L -2.0943
75 R L -1.5221
76 F L 0.0000
77 T L -0.4583
78 G L 0.0000
79 S L -0.4973
80 G L -1.3540
83 S L -1.4980
84 G L -1.6011
85 T L -2.0002
86 D L -2.7868
87 F L 0.0000
88 T L -0.8103
89 L L 0.0000
90 T L -0.5154
91 I L 0.0000
92 S L -1.4331
93 S L -1.2514
94 V L 0.0000
95 Q L -0.6634
96 A L -0.7708
97 E L -1.5775
98 D L 0.0000
99 L L -0.3609
100 A L 0.0000
101 V L -0.0760
102 Y L 0.0000
103 Y L 0.0000
104 C L 0.0000
105 Q L 0.0000
106 H L 0.0000
107 H L 0.3755
108 Y L 0.9654
109 G L 0.6681
114 V L 0.7054
115 P L -0.3403
116 W L 0.0000
117 T L 0.2796
118 F L 0.2846
119 G L 0.0000
120 G L -0.7613
121 G L 0.0000
122 T L 0.0000
123 K L -0.4596
124 L L 0.0000
125 E L -0.5224
126 I L -0.7382
127 K L -1.5075
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Laboratory of Theory of Biopolymers 2018