Project name: GGKGHFF20

Status: done

Started: 2026-02-23 07:40:36
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Chain sequence(s) A: GGKGHFF
C: GGKGHFF
B: GGKGHFF
E: GGKGHFF
D: GGKGHFF
G: GGKGHFF
F: GGKGHFF
I: GGKGHFF
H: GGKGHFF
K: GGKGHFF
J: GGKGHFF
M: GGKGHFF
L: GGKGHFF
O: GGKGHFF
N: GGKGHFF
Q: GGKGHFF
P: GGKGHFF
S: GGKGHFF
R: GGKGHFF
T: GGKGHFF
input PDB
Selected Chain(s) A,C,B,E,D,G,F,I,H,K,J,M,L,O,N,Q,P,S,R,T
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:05:46)
[INFO]       Main:     Simulation completed successfully.                                          (00:05:52)
Show buried residues

Minimal score value
-3.3829
Maximal score value
2.5649
Average score
-0.6729
Total score value
-94.2063

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 G A -1.0697
2 G A -1.3473
3 K A -0.9610
4 G A -0.4956
5 H A 0.0000
6 F A 1.3264
7 F A 1.7448
1 G B -1.1717
2 G B -1.3235
3 K B -0.7594
4 G B -0.2604
5 H B 0.4388
6 F B 1.5442
7 F B 2.2678
1 G C -1.9345
2 G C -2.9507
3 K C -2.5799
4 G C 0.0000
5 H C 0.0000
6 F C 2.5649
7 F C 0.0000
1 G D -1.8148
2 G D -2.6456
3 K D -3.1557
4 G D 0.0000
5 H D -0.3176
6 F D 1.8327
7 F D 2.4979
1 G E -1.4705
2 G E -2.4069
3 K E -3.1332
4 G E -1.6634
5 H E -0.8908
6 F E 1.2903
7 F E 2.3468
1 G F -1.6367
2 G F -2.4142
3 K F -2.4982
4 G F 0.0000
5 H F -0.2245
6 F F 1.6715
7 F F 2.5419
1 G G -1.4742
2 G G -2.2996
3 K G -2.4038
4 G G -1.0883
5 H G -0.4278
6 F G 1.5179
7 F G 2.4538
1 G H -1.5852
2 G H -2.2990
3 K H -2.6523
4 G H -1.2013
5 H H -0.3863
6 F H 1.4736
7 F H 2.0356
1 G I -1.4074
2 G I -2.0987
3 K I -2.6765
4 G I -1.2713
5 H I -0.3624
6 F I 1.3556
7 F I 2.2122
1 G J -1.5806
2 G J -2.7119
3 K J -2.8820
4 G J -1.5697
5 H J -0.5729
6 F J 1.7632
7 F J 2.0639
1 G K -1.9756
2 G K -2.8601
3 K K -3.3746
4 G K -1.8203
5 H K -0.5935
6 F K 1.1546
7 F K 1.9413
1 G L -1.7331
2 G L -2.4412
3 K L -2.9179
4 G L -1.9001
5 H L -0.9867
6 F L 0.0000
7 F L 1.6484
1 G M -1.2192
2 G M -1.7453
3 K M -2.0268
4 G M -0.5495
5 H M 0.1735
6 F M 2.3687
7 F M 2.1504
1 G N -1.3019
2 G N -1.9772
3 K N -2.3646
4 G N -1.1242
5 H N 0.1524
6 F N 2.2928
7 F N 0.0000
1 G O -1.5138
2 G O -2.5768
3 K O -2.3911
4 G O -1.0180
5 H O 0.1407
6 F O 1.7264
7 F O 1.7789
1 G P -1.8143
2 G P -2.6106
3 K P -2.8034
4 G P 0.0000
5 H P -0.5011
6 F P 0.6960
7 F P 0.7127
1 G Q -1.3415
2 G Q -1.9899
3 K Q -2.6606
4 G Q -0.8149
5 H Q -0.5343
6 F Q 0.6544
7 F Q 0.0000
1 G R -1.2130
2 G R -2.1887
3 K R -2.4883
4 G R -1.3850
5 H R -0.4218
6 F R 1.9617
7 F R 1.6171
1 G S -2.0595
2 G S -3.0347
3 K S -3.3829
4 G S -1.7157
5 H S -0.8343
6 F S 1.2066
7 F S 1.4263
1 G T -1.9232
2 G T -2.4981
3 K T -2.9660
4 G T -2.2211
5 H T -1.1780
6 F T 0.5729
7 F T 1.5435
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Laboratory of Theory of Biopolymers 2018