| Chain sequence(s) |
A: GGKGHFF
C: GGKGHFF B: GGKGHFF E: GGKGHFF D: GGKGHFF G: GGKGHFF F: GGKGHFF I: GGKGHFF H: GGKGHFF K: GGKGHFF J: GGKGHFF M: GGKGHFF L: GGKGHFF O: GGKGHFF N: GGKGHFF Q: GGKGHFF P: GGKGHFF S: GGKGHFF R: GGKGHFF T: GGKGHFF input PDB |
| Selected Chain(s) | A,C,B,E,D,G,F,I,H,K,J,M,L,O,N,Q,P,S,R,T |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:05:46)
[INFO] Main: Simulation completed successfully. (00:05:52)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | G | A | -1.0697 | |
| 2 | G | A | -1.3473 | |
| 3 | K | A | -0.9610 | |
| 4 | G | A | -0.4956 | |
| 5 | H | A | 0.0000 | |
| 6 | F | A | 1.3264 | |
| 7 | F | A | 1.7448 | |
| 1 | G | B | -1.1717 | |
| 2 | G | B | -1.3235 | |
| 3 | K | B | -0.7594 | |
| 4 | G | B | -0.2604 | |
| 5 | H | B | 0.4388 | |
| 6 | F | B | 1.5442 | |
| 7 | F | B | 2.2678 | |
| 1 | G | C | -1.9345 | |
| 2 | G | C | -2.9507 | |
| 3 | K | C | -2.5799 | |
| 4 | G | C | 0.0000 | |
| 5 | H | C | 0.0000 | |
| 6 | F | C | 2.5649 | |
| 7 | F | C | 0.0000 | |
| 1 | G | D | -1.8148 | |
| 2 | G | D | -2.6456 | |
| 3 | K | D | -3.1557 | |
| 4 | G | D | 0.0000 | |
| 5 | H | D | -0.3176 | |
| 6 | F | D | 1.8327 | |
| 7 | F | D | 2.4979 | |
| 1 | G | E | -1.4705 | |
| 2 | G | E | -2.4069 | |
| 3 | K | E | -3.1332 | |
| 4 | G | E | -1.6634 | |
| 5 | H | E | -0.8908 | |
| 6 | F | E | 1.2903 | |
| 7 | F | E | 2.3468 | |
| 1 | G | F | -1.6367 | |
| 2 | G | F | -2.4142 | |
| 3 | K | F | -2.4982 | |
| 4 | G | F | 0.0000 | |
| 5 | H | F | -0.2245 | |
| 6 | F | F | 1.6715 | |
| 7 | F | F | 2.5419 | |
| 1 | G | G | -1.4742 | |
| 2 | G | G | -2.2996 | |
| 3 | K | G | -2.4038 | |
| 4 | G | G | -1.0883 | |
| 5 | H | G | -0.4278 | |
| 6 | F | G | 1.5179 | |
| 7 | F | G | 2.4538 | |
| 1 | G | H | -1.5852 | |
| 2 | G | H | -2.2990 | |
| 3 | K | H | -2.6523 | |
| 4 | G | H | -1.2013 | |
| 5 | H | H | -0.3863 | |
| 6 | F | H | 1.4736 | |
| 7 | F | H | 2.0356 | |
| 1 | G | I | -1.4074 | |
| 2 | G | I | -2.0987 | |
| 3 | K | I | -2.6765 | |
| 4 | G | I | -1.2713 | |
| 5 | H | I | -0.3624 | |
| 6 | F | I | 1.3556 | |
| 7 | F | I | 2.2122 | |
| 1 | G | J | -1.5806 | |
| 2 | G | J | -2.7119 | |
| 3 | K | J | -2.8820 | |
| 4 | G | J | -1.5697 | |
| 5 | H | J | -0.5729 | |
| 6 | F | J | 1.7632 | |
| 7 | F | J | 2.0639 | |
| 1 | G | K | -1.9756 | |
| 2 | G | K | -2.8601 | |
| 3 | K | K | -3.3746 | |
| 4 | G | K | -1.8203 | |
| 5 | H | K | -0.5935 | |
| 6 | F | K | 1.1546 | |
| 7 | F | K | 1.9413 | |
| 1 | G | L | -1.7331 | |
| 2 | G | L | -2.4412 | |
| 3 | K | L | -2.9179 | |
| 4 | G | L | -1.9001 | |
| 5 | H | L | -0.9867 | |
| 6 | F | L | 0.0000 | |
| 7 | F | L | 1.6484 | |
| 1 | G | M | -1.2192 | |
| 2 | G | M | -1.7453 | |
| 3 | K | M | -2.0268 | |
| 4 | G | M | -0.5495 | |
| 5 | H | M | 0.1735 | |
| 6 | F | M | 2.3687 | |
| 7 | F | M | 2.1504 | |
| 1 | G | N | -1.3019 | |
| 2 | G | N | -1.9772 | |
| 3 | K | N | -2.3646 | |
| 4 | G | N | -1.1242 | |
| 5 | H | N | 0.1524 | |
| 6 | F | N | 2.2928 | |
| 7 | F | N | 0.0000 | |
| 1 | G | O | -1.5138 | |
| 2 | G | O | -2.5768 | |
| 3 | K | O | -2.3911 | |
| 4 | G | O | -1.0180 | |
| 5 | H | O | 0.1407 | |
| 6 | F | O | 1.7264 | |
| 7 | F | O | 1.7789 | |
| 1 | G | P | -1.8143 | |
| 2 | G | P | -2.6106 | |
| 3 | K | P | -2.8034 | |
| 4 | G | P | 0.0000 | |
| 5 | H | P | -0.5011 | |
| 6 | F | P | 0.6960 | |
| 7 | F | P | 0.7127 | |
| 1 | G | Q | -1.3415 | |
| 2 | G | Q | -1.9899 | |
| 3 | K | Q | -2.6606 | |
| 4 | G | Q | -0.8149 | |
| 5 | H | Q | -0.5343 | |
| 6 | F | Q | 0.6544 | |
| 7 | F | Q | 0.0000 | |
| 1 | G | R | -1.2130 | |
| 2 | G | R | -2.1887 | |
| 3 | K | R | -2.4883 | |
| 4 | G | R | -1.3850 | |
| 5 | H | R | -0.4218 | |
| 6 | F | R | 1.9617 | |
| 7 | F | R | 1.6171 | |
| 1 | G | S | -2.0595 | |
| 2 | G | S | -3.0347 | |
| 3 | K | S | -3.3829 | |
| 4 | G | S | -1.7157 | |
| 5 | H | S | -0.8343 | |
| 6 | F | S | 1.2066 | |
| 7 | F | S | 1.4263 | |
| 1 | G | T | -1.9232 | |
| 2 | G | T | -2.4981 | |
| 3 | K | T | -2.9660 | |
| 4 | G | T | -2.2211 | |
| 5 | H | T | -1.1780 | |
| 6 | F | T | 0.5729 | |
| 7 | F | T | 1.5435 |