Project name: Amilina 37 aa

Status: done

Started: 2026-03-22 13:41:54
Settings
Chain sequence(s) A: KCNTATCATQRLANFLVHSSNNFGAILSSTNVGSNTY
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:24)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:25)
Show buried residues

Minimal score value
-1.6303
Maximal score value
2.7056
Average score
0.2179
Total score value
8.0623

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 K A -1.6303
2 C A -0.7945
3 N A -1.2814
4 T A -0.7135
5 A A -0.5804
6 T A -0.8447
7 C A -0.9310
8 A A -0.8232
9 T A -0.7651
10 Q A -1.5064
11 R A -1.3522
12 L A 0.6628
13 A A 0.3023
14 N A -0.3131
15 F A 1.5084
16 L A 1.9156
17 V A 1.5824
18 H A 0.2112
19 S A 0.9550
20 S A 0.8689
21 N A -0.1821
22 N A 0.5067
23 F A 2.3413
24 G A 1.0496
25 A A 0.8984
26 I A 2.7056
27 L A 2.3930
28 S A 0.9620
29 S A 1.1441
30 T A 0.6345
31 N A -0.2538
32 V A 0.4656
33 G A -0.6140
34 S A -0.5501
35 N A -0.7894
36 T A 0.0495
37 Y A 0.8306
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018