| Chain sequence(s) |
H: QVQLQQPGTELVKPGASVKLSCKTSGYTFTSYWLHWVKQRPGQGLEWIGNINPNNGGTNYNEKFKTKATLTVDKSSSTAYMQLSRLTSEDSAVYYCLRLGPYYSNYFDYWGQGTTLTVSS
L: QIVLTQSPAIVSASPGEKVTISCSASSSVSYMYWYQQKPGSSPKPWIYRTSNLASGVPTRFSGSGSGTSYSLTISGMEAEDAATYYCQHFHNYPFTFGSGTKLEIK input PDB |
| Selected Chain(s) | H,L |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:52)
[INFO] Main: Simulation completed successfully. (00:01:54)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | H | -1.4364 | |
| 2 | V | H | -0.9661 | |
| 3 | Q | H | -1.6155 | |
| 4 | L | H | 0.0000 | |
| 5 | Q | H | -2.1311 | |
| 6 | Q | H | -1.5557 | |
| 7 | P | H | -1.1519 | |
| 8 | G | H | -1.0910 | |
| 9 | T | H | -0.2971 | |
| 11 | E | H | -0.2854 | |
| 12 | L | H | 0.8442 | |
| 13 | V | H | -0.2721 | |
| 14 | K | H | -1.8436 | |
| 15 | P | H | -1.7016 | |
| 16 | G | H | -1.7907 | |
| 17 | A | H | -1.4396 | |
| 18 | S | H | -1.6263 | |
| 19 | V | H | 0.0000 | |
| 20 | K | H | -1.9224 | |
| 21 | L | H | 0.0000 | |
| 22 | S | H | -0.8888 | |
| 23 | C | H | 0.0000 | |
| 24 | K | H | -1.6459 | |
| 25 | T | H | 0.0000 | |
| 26 | S | H | -1.1324 | |
| 27 | G | H | -0.9606 | |
| 28 | Y | H | -0.3756 | |
| 29 | T | H | -0.1042 | |
| 30 | F | H | 0.0000 | |
| 35 | T | H | -1.1299 | |
| 36 | S | H | -0.3595 | |
| 37 | Y | H | 0.1353 | |
| 38 | W | H | 0.0496 | |
| 39 | L | H | 0.0000 | |
| 40 | H | H | 0.0000 | |
| 41 | W | H | 0.0000 | |
| 42 | V | H | 0.0000 | |
| 43 | K | H | -0.5322 | |
| 44 | Q | H | -0.8643 | |
| 45 | R | H | -1.4018 | |
| 46 | P | H | -1.0592 | |
| 47 | G | H | -1.3517 | |
| 48 | Q | H | -1.8568 | |
| 49 | G | H | -1.1850 | |
| 50 | L | H | 0.0000 | |
| 51 | E | H | -0.8931 | |
| 52 | W | H | 0.0000 | |
| 53 | I | H | 0.0000 | |
| 54 | G | H | 0.0000 | |
| 55 | N | H | 0.0000 | |
| 56 | I | H | 0.0000 | |
| 57 | N | H | -1.0511 | |
| 58 | P | H | 0.0000 | |
| 59 | N | H | -2.3663 | |
| 62 | N | H | -2.2854 | |
| 63 | G | H | -1.5086 | |
| 64 | G | H | -1.0453 | |
| 65 | T | H | -0.5594 | |
| 66 | N | H | -0.8000 | |
| 67 | Y | H | -1.1617 | |
| 68 | N | H | 0.0000 | |
| 69 | E | H | -3.2966 | |
| 70 | K | H | -3.1132 | |
| 71 | F | H | 0.0000 | |
| 72 | K | H | -2.9362 | |
| 74 | T | H | -1.7808 | |
| 75 | K | H | -1.7515 | |
| 76 | A | H | 0.0000 | |
| 77 | T | H | -0.7609 | |
| 78 | L | H | 0.0000 | |
| 79 | T | H | -0.4329 | |
| 80 | V | H | -0.9046 | |
| 81 | D | H | -1.5187 | |
| 82 | K | H | -2.4206 | |
| 83 | S | H | -1.2070 | |
| 84 | S | H | -0.9901 | |
| 85 | S | H | -1.1306 | |
| 86 | T | H | 0.0000 | |
| 87 | A | H | 0.0000 | |
| 88 | Y | H | -0.4636 | |
| 89 | M | H | 0.0000 | |
| 90 | Q | H | -1.2957 | |
| 91 | L | H | 0.0000 | |
| 92 | S | H | -1.5708 | |
| 93 | R | H | -2.4070 | |
| 94 | L | H | 0.0000 | |
| 95 | T | H | -1.6314 | |
| 96 | S | H | -1.4204 | |
| 97 | E | H | -2.0070 | |
| 98 | D | H | 0.0000 | |
| 99 | S | H | -0.6723 | |
| 100 | A | H | 0.0000 | |
| 101 | V | H | -0.1563 | |
| 102 | Y | H | 0.0000 | |
| 103 | Y | H | 0.0000 | |
| 104 | C | H | 0.0000 | |
| 105 | L | H | 0.0000 | |
| 106 | R | H | 0.0000 | |
| 107 | L | H | 0.0000 | |
| 108 | G | H | 0.0000 | |
| 109 | P | H | 0.9785 | |
| 110 | Y | H | 1.9035 | |
| 111 | Y | H | 1.9023 | |
| 112 | S | H | 0.6980 | |
| 113 | N | H | 0.5388 | |
| 114 | Y | H | 0.3762 | |
| 115 | F | H | 0.0000 | |
| 116 | D | H | -0.1357 | |
| 117 | Y | H | 0.0747 | |
| 118 | W | H | -0.4250 | |
| 119 | G | H | 0.0000 | |
| 120 | Q | H | -1.6512 | |
| 121 | G | H | 0.0000 | |
| 122 | T | H | 0.0000 | |
| 123 | T | H | -0.2604 | |
| 124 | L | H | 0.0000 | |
| 125 | T | H | -0.1347 | |
| 126 | V | H | 0.0000 | |
| 127 | S | H | -0.5441 | |
| 128 | S | H | -0.7293 | |
| 1 | Q | L | -1.2006 | |
| 2 | I | L | 0.0000 | |
| 3 | V | L | 1.3174 | |
| 4 | L | L | 0.0000 | |
| 5 | T | L | 0.1674 | |
| 6 | Q | L | 0.0000 | |
| 7 | S | L | -0.0709 | |
| 8 | P | L | 0.2183 | |
| 9 | A | L | 0.6079 | |
| 10 | I | L | 1.3962 | |
| 11 | V | L | 0.3625 | |
| 12 | S | L | -0.5311 | |
| 13 | A | L | 0.0000 | |
| 14 | S | L | -1.7532 | |
| 15 | P | L | -1.7411 | |
| 16 | G | L | -1.9543 | |
| 17 | E | L | -2.5457 | |
| 18 | K | L | -2.5534 | |
| 19 | V | L | 0.0000 | |
| 20 | T | L | -0.6236 | |
| 21 | I | L | 0.0000 | |
| 22 | S | L | -0.3403 | |
| 23 | C | L | 0.0000 | |
| 24 | S | L | -0.1679 | |
| 25 | A | L | 0.0000 | |
| 26 | S | L | 0.0254 | |
| 27 | S | L | -0.3761 | |
| 28 | S | L | -0.6012 | |
| 29 | V | L | 0.0000 | |
| 37 | S | L | -0.4562 | |
| 38 | Y | L | 0.0523 | |
| 39 | M | L | 0.0000 | |
| 40 | Y | L | 0.0000 | |
| 41 | W | L | 0.0000 | |
| 42 | Y | L | 0.0000 | |
| 43 | Q | L | 0.0000 | |
| 44 | Q | L | -0.9271 | |
| 45 | K | L | -1.2598 | |
| 46 | P | L | -0.8646 | |
| 47 | G | L | -0.9373 | |
| 48 | S | L | -0.9856 | |
| 49 | S | L | -0.8039 | |
| 50 | P | L | 0.0000 | |
| 51 | K | L | -0.9753 | |
| 52 | P | L | -0.4138 | |
| 53 | W | L | 0.0000 | |
| 54 | I | L | 0.0000 | |
| 55 | Y | L | -0.3681 | |
| 56 | R | L | -0.7214 | |
| 57 | T | L | 0.0000 | |
| 65 | S | L | -0.8326 | |
| 66 | N | L | -1.1571 | |
| 67 | L | L | -0.3950 | |
| 68 | A | L | -0.4215 | |
| 69 | S | L | -0.5161 | |
| 70 | G | L | -0.5356 | |
| 71 | V | L | 0.0000 | |
| 72 | P | L | -0.2616 | |
| 74 | T | L | -0.2664 | |
| 75 | R | L | -0.7953 | |
| 76 | F | L | 0.0000 | |
| 77 | S | L | -0.4358 | |
| 78 | G | L | 0.0000 | |
| 79 | S | L | -0.6904 | |
| 80 | G | L | -0.6740 | |
| 83 | S | L | -0.5690 | |
| 84 | G | L | -0.5348 | |
| 85 | T | L | -0.5172 | |
| 86 | S | L | -0.6505 | |
| 87 | Y | L | 0.0000 | |
| 88 | S | L | -0.4000 | |
| 89 | L | L | 0.0000 | |
| 90 | T | L | -0.5583 | |
| 91 | I | L | 0.0000 | |
| 92 | S | L | -1.5874 | |
| 93 | G | L | -1.8637 | |
| 94 | M | L | 0.0000 | |
| 95 | E | L | -2.0996 | |
| 96 | A | L | -1.4894 | |
| 97 | E | L | -1.5785 | |
| 98 | D | L | 0.0000 | |
| 99 | A | L | -1.2900 | |
| 100 | A | L | 0.0000 | |
| 101 | T | L | 0.0000 | |
| 102 | Y | L | 0.0000 | |
| 103 | Y | L | 0.0000 | |
| 104 | C | L | 0.0000 | |
| 105 | Q | L | 0.0000 | |
| 106 | H | L | 0.0000 | |
| 107 | F | L | -0.3602 | |
| 108 | H | L | -1.4208 | |
| 109 | N | L | -1.5882 | |
| 114 | Y | L | -0.6019 | |
| 115 | P | L | -0.9508 | |
| 116 | F | L | 0.0000 | |
| 117 | T | L | -0.0700 | |
| 118 | F | L | 0.0000 | |
| 119 | G | L | 0.0000 | |
| 120 | S | L | -0.4432 | |
| 121 | G | L | 0.0000 | |
| 122 | T | L | 0.0000 | |
| 123 | K | L | -0.6922 | |
| 124 | L | L | 0.0000 | |
| 125 | E | L | -1.0876 | |
| 126 | I | L | -1.1170 | |
| 127 | K | L | -1.7129 |