Project name: HA-tbid

Status: done

Started: 2026-07-15 15:51:05
Settings
Chain sequence(s) A: YPYDVPDYAGNRSSHSRLGRIEADSESQEDIIRNIARHLAQVGDSMDRSIPPGLVNGLALQLRNTSRSEEDRNRDLATALEQLLQAYPRDMEKEKTMLVLALLLAKKVASHTPSLLRDVFHTTVNFINQNLRTYVRSLARNGMD
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:02:44)
[INFO]       Main:     Simulation completed successfully.                                          (00:02:45)
Show buried residues

Minimal score value
-3.8361
Maximal score value
1.305
Average score
-1.3873
Total score value
-199.7776

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
54 Y A 1.3050
55 P A 0.6908
56 Y A 1.1963
57 D A -0.5019
58 V A 0.8995
59 P A -0.2595
60 D A -1.1191
61 Y A 0.3565
62 A A -0.3689
63 G A -1.4521
64 N A -2.3034
65 R A -2.7408
66 S A -1.8474
67 S A -1.6513
68 H A -1.5523
69 S A -1.5391
70 R A -1.8373
71 L A 0.0871
72 G A -1.0130
73 R A -1.6015
74 I A -0.1095
75 E A -2.2253
76 A A -1.8605
77 D A -2.8575
78 S A -2.9313
79 E A -3.7626
80 S A -2.9394
81 Q A -3.2038
82 E A -3.7325
83 D A -3.4801
84 I A 0.0000
85 I A -1.1782
86 R A -2.9063
87 N A -2.0637
88 I A -0.9470
89 A A -1.4570
90 R A -2.6013
91 H A -1.9539
92 L A -1.2888
93 A A -1.7224
94 Q A -2.3666
95 V A 0.0000
96 G A 0.0000
97 D A -2.7909
98 S A -1.8456
99 M A 0.0000
100 D A -2.2170
101 R A -2.5396
102 S A -1.3793
103 I A 0.0000
104 P A -0.8765
105 P A -0.9468
106 G A -0.9632
107 L A -0.5148
108 V A 0.0000
109 N A -1.2343
110 G A -0.6993
111 L A 0.0000
112 A A 0.0000
113 L A -0.0101
114 Q A -1.3586
115 L A 0.0000
116 R A -2.3121
117 N A -2.2144
118 T A -1.6659
119 S A -1.3431
120 R A -2.0998
121 S A -2.4080
122 E A -3.5824
123 E A -3.8361
124 D A -3.4804
125 R A -3.1044
126 N A -2.8659
127 R A -3.3545
128 D A -2.5821
129 L A 0.0000
130 A A -1.8249
131 T A -1.7572
132 A A 0.0000
133 L A 0.0000
134 E A -2.8361
135 Q A -2.3516
136 L A 0.0000
137 L A -1.9988
138 Q A -2.1416
139 A A -1.1672
140 Y A -1.4337
141 P A -2.1247
142 R A -3.1527
143 D A -3.1268
144 M A -2.5589
145 E A -3.5050
146 K A -3.6313
147 E A -2.7387
148 K A -1.6309
149 T A 0.0000
150 M A -1.2808
151 L A 0.0000
152 V A 0.0000
153 L A 0.0000
154 A A 0.0000
155 L A 0.6986
156 L A 0.0000
157 L A 0.0000
158 A A 0.0000
159 K A -1.2681
160 K A -1.3068
161 V A 0.0000
162 A A -1.0647
163 S A -1.1677
164 H A -1.5779
165 T A -1.0317
166 P A -1.0740
167 S A -1.0873
168 L A 0.0000
169 L A -0.9973
170 R A -1.8083
171 D A -1.5644
172 V A 0.0000
173 F A 0.4296
174 H A -0.7939
175 T A 0.0000
176 T A 0.0000
177 V A 0.6841
178 N A -1.1034
179 F A 0.0000
180 I A -1.0249
181 N A -1.7777
182 Q A -2.3833
183 N A -2.3037
184 L A 0.0000
185 R A -2.9361
186 T A -1.9096
187 Y A -1.7324
188 V A -1.6426
189 R A -2.7202
190 S A -2.0347
191 L A -1.4810
192 A A -1.6106
193 R A -2.8733
194 N A -2.5636
195 G A -1.5021
196 M A -1.0041
197 D A -1.9184
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Laboratory of Theory of Biopolymers 2018