| Chain sequence(s) |
A: YPYDVPDYAGNRSSHSRLGRIEADSESQEDIIRNIARHLAQVGDSMDRSIPPGLVNGLALQLRNTSRSEEDRNRDLATALEQLLQAYPRDMEKEKTMLVLALLLAKKVASHTPSLLRDVFHTTVNFINQNLRTYVRSLARNGMD
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:02:44)
[INFO] Main: Simulation completed successfully. (00:02:45)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 54 | Y | A | 1.3050 | |
| 55 | P | A | 0.6908 | |
| 56 | Y | A | 1.1963 | |
| 57 | D | A | -0.5019 | |
| 58 | V | A | 0.8995 | |
| 59 | P | A | -0.2595 | |
| 60 | D | A | -1.1191 | |
| 61 | Y | A | 0.3565 | |
| 62 | A | A | -0.3689 | |
| 63 | G | A | -1.4521 | |
| 64 | N | A | -2.3034 | |
| 65 | R | A | -2.7408 | |
| 66 | S | A | -1.8474 | |
| 67 | S | A | -1.6513 | |
| 68 | H | A | -1.5523 | |
| 69 | S | A | -1.5391 | |
| 70 | R | A | -1.8373 | |
| 71 | L | A | 0.0871 | |
| 72 | G | A | -1.0130 | |
| 73 | R | A | -1.6015 | |
| 74 | I | A | -0.1095 | |
| 75 | E | A | -2.2253 | |
| 76 | A | A | -1.8605 | |
| 77 | D | A | -2.8575 | |
| 78 | S | A | -2.9313 | |
| 79 | E | A | -3.7626 | |
| 80 | S | A | -2.9394 | |
| 81 | Q | A | -3.2038 | |
| 82 | E | A | -3.7325 | |
| 83 | D | A | -3.4801 | |
| 84 | I | A | 0.0000 | |
| 85 | I | A | -1.1782 | |
| 86 | R | A | -2.9063 | |
| 87 | N | A | -2.0637 | |
| 88 | I | A | -0.9470 | |
| 89 | A | A | -1.4570 | |
| 90 | R | A | -2.6013 | |
| 91 | H | A | -1.9539 | |
| 92 | L | A | -1.2888 | |
| 93 | A | A | -1.7224 | |
| 94 | Q | A | -2.3666 | |
| 95 | V | A | 0.0000 | |
| 96 | G | A | 0.0000 | |
| 97 | D | A | -2.7909 | |
| 98 | S | A | -1.8456 | |
| 99 | M | A | 0.0000 | |
| 100 | D | A | -2.2170 | |
| 101 | R | A | -2.5396 | |
| 102 | S | A | -1.3793 | |
| 103 | I | A | 0.0000 | |
| 104 | P | A | -0.8765 | |
| 105 | P | A | -0.9468 | |
| 106 | G | A | -0.9632 | |
| 107 | L | A | -0.5148 | |
| 108 | V | A | 0.0000 | |
| 109 | N | A | -1.2343 | |
| 110 | G | A | -0.6993 | |
| 111 | L | A | 0.0000 | |
| 112 | A | A | 0.0000 | |
| 113 | L | A | -0.0101 | |
| 114 | Q | A | -1.3586 | |
| 115 | L | A | 0.0000 | |
| 116 | R | A | -2.3121 | |
| 117 | N | A | -2.2144 | |
| 118 | T | A | -1.6659 | |
| 119 | S | A | -1.3431 | |
| 120 | R | A | -2.0998 | |
| 121 | S | A | -2.4080 | |
| 122 | E | A | -3.5824 | |
| 123 | E | A | -3.8361 | |
| 124 | D | A | -3.4804 | |
| 125 | R | A | -3.1044 | |
| 126 | N | A | -2.8659 | |
| 127 | R | A | -3.3545 | |
| 128 | D | A | -2.5821 | |
| 129 | L | A | 0.0000 | |
| 130 | A | A | -1.8249 | |
| 131 | T | A | -1.7572 | |
| 132 | A | A | 0.0000 | |
| 133 | L | A | 0.0000 | |
| 134 | E | A | -2.8361 | |
| 135 | Q | A | -2.3516 | |
| 136 | L | A | 0.0000 | |
| 137 | L | A | -1.9988 | |
| 138 | Q | A | -2.1416 | |
| 139 | A | A | -1.1672 | |
| 140 | Y | A | -1.4337 | |
| 141 | P | A | -2.1247 | |
| 142 | R | A | -3.1527 | |
| 143 | D | A | -3.1268 | |
| 144 | M | A | -2.5589 | |
| 145 | E | A | -3.5050 | |
| 146 | K | A | -3.6313 | |
| 147 | E | A | -2.7387 | |
| 148 | K | A | -1.6309 | |
| 149 | T | A | 0.0000 | |
| 150 | M | A | -1.2808 | |
| 151 | L | A | 0.0000 | |
| 152 | V | A | 0.0000 | |
| 153 | L | A | 0.0000 | |
| 154 | A | A | 0.0000 | |
| 155 | L | A | 0.6986 | |
| 156 | L | A | 0.0000 | |
| 157 | L | A | 0.0000 | |
| 158 | A | A | 0.0000 | |
| 159 | K | A | -1.2681 | |
| 160 | K | A | -1.3068 | |
| 161 | V | A | 0.0000 | |
| 162 | A | A | -1.0647 | |
| 163 | S | A | -1.1677 | |
| 164 | H | A | -1.5779 | |
| 165 | T | A | -1.0317 | |
| 166 | P | A | -1.0740 | |
| 167 | S | A | -1.0873 | |
| 168 | L | A | 0.0000 | |
| 169 | L | A | -0.9973 | |
| 170 | R | A | -1.8083 | |
| 171 | D | A | -1.5644 | |
| 172 | V | A | 0.0000 | |
| 173 | F | A | 0.4296 | |
| 174 | H | A | -0.7939 | |
| 175 | T | A | 0.0000 | |
| 176 | T | A | 0.0000 | |
| 177 | V | A | 0.6841 | |
| 178 | N | A | -1.1034 | |
| 179 | F | A | 0.0000 | |
| 180 | I | A | -1.0249 | |
| 181 | N | A | -1.7777 | |
| 182 | Q | A | -2.3833 | |
| 183 | N | A | -2.3037 | |
| 184 | L | A | 0.0000 | |
| 185 | R | A | -2.9361 | |
| 186 | T | A | -1.9096 | |
| 187 | Y | A | -1.7324 | |
| 188 | V | A | -1.6426 | |
| 189 | R | A | -2.7202 | |
| 190 | S | A | -2.0347 | |
| 191 | L | A | -1.4810 | |
| 192 | A | A | -1.6106 | |
| 193 | R | A | -2.8733 | |
| 194 | N | A | -2.5636 | |
| 195 | G | A | -1.5021 | |
| 196 | M | A | -1.0041 | |
| 197 | D | A | -1.9184 |