Project name: 5e7b024096d7961

Status: done

Started: 2026-06-27 14:46:32
Settings
Chain sequence(s) A: AEAEAKAKAEAEAKAK
C: AEAEAKAKAEAEAKAK
B: AEAEAKAKAEAEAKAK
E: AEAEAKAKAEAEAKAK
D: AEAEAKAKAEAEAKAK
G: AEAEAKAKAEAEAKAK
F: AEAEAKAKAEAEAKAK
I: AEAEAKAKAEAEAKAK
H: AEAEAKAKAEAEAKAK
K: AEAEAKAKAEAEAKAK
J: AEAEAKAKAEAEAKAK
L: AEAEAKAKAEAEAKAK
input PDB
Selected Chain(s) A,C,B,E,D,G,F,I,H,K,J,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:13:26)
[INFO]       Main:     Simulation completed successfully.                                          (00:13:29)
Show buried residues

Minimal score value
-3.8336
Maximal score value
0.0
Average score
-2.6209
Total score value
-503.2048

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 A A -1.4755
2 E A -2.6067
3 A A -2.2591
4 E A -3.1114
5 A A -2.5679
6 K A -3.3294
7 A A -3.0964
8 K A -3.4409
9 A A -3.0083
10 E A -3.6891
11 A A -3.1337
12 E A -3.3779
13 A A -2.8626
14 K A -3.1149
15 A A -2.3447
16 K A -2.5489
1 A B -1.8448
2 E B -2.9361
3 A B -2.2170
4 E B -3.0730
5 A B -3.1392
6 K B -3.1212
7 A B -2.8164
8 K B -3.4956
9 A B 0.0000
10 E B -3.5421
11 A B -2.9892
12 E B -3.6212
13 A B 0.0000
14 K B -3.5482
15 A B -2.3806
16 K B -2.9297
1 A C -1.5689
2 E C -2.4376
3 A C -1.8905
4 E C -2.5018
5 A C -2.0811
6 K C -2.8663
7 A C -2.6059
8 K C -2.1868
9 A C -2.2804
10 E C -3.1633
11 A C -2.6281
12 E C -2.6290
13 A C -2.4928
14 K C -2.9815
15 A C -2.4469
16 K C -2.4513
1 A D -1.7870
2 E D -2.4317
3 A D -1.4447
4 E D -2.1962
5 A D -2.0123
6 K D -2.1479
7 A D -1.9099
8 K D -2.5728
9 A D -1.9852
10 E D -3.1467
11 A D -2.8749
12 E D -2.9288
13 A D -2.6760
14 K D -3.3616
15 A D -2.7886
16 K D -2.9949
1 A E -1.9083
2 E E -2.7243
3 A E -1.7252
4 E E -2.2135
5 A E -2.0695
6 K E -2.8319
7 A E -2.4211
8 K E -2.4623
9 A E -2.5171
10 E E -3.3951
11 A E -3.3076
12 E E -3.8312
13 A E -2.8631
14 K E -3.2130
15 A E -3.0314
16 K E -2.6201
1 A F -2.2154
2 E F -2.9972
3 A F -1.7326
4 E F -2.1332
5 A F -2.6471
6 K F -2.6698
7 A F -2.0188
8 K F -2.6447
9 A F -2.3021
10 E F -3.3294
11 A F -3.1583
12 E F -3.4562
13 A F -2.7001
14 K F -3.2545
15 A F -3.0235
16 K F -2.6941
1 A G -1.4793
2 E G -2.5245
3 A G -1.6442
4 E G -1.9885
5 A G -1.9492
6 K G -2.3128
7 A G -2.1380
8 K G -2.3329
9 A G -2.1397
10 E G -3.3158
11 A G -2.9148
12 E G -3.0234
13 A G -3.3368
14 K G -3.3663
15 A G -2.7453
16 K G -2.9148
1 A H -1.8190
2 E H -2.4939
3 A H -1.4861
4 E H -1.9940
5 A H -2.0817
6 K H -2.1061
7 A H -1.9166
8 K H -2.3513
9 A H -2.0271
10 E H -3.1651
11 A H -2.8242
12 E H -2.8486
13 A H -2.8743
14 K H -3.1339
15 A H -2.7892
16 K H -2.6884
1 A I -1.6397
2 E I -2.4765
3 A I -1.6716
4 E I -2.0713
5 A I -2.1692
6 K I -2.8705
7 A I -2.2691
8 K I -2.3110
9 A I -2.3452
10 E I -3.2324
11 A I -2.7028
12 E I -3.1325
13 A I -2.6068
14 K I -3.0466
15 A I -2.7618
16 K I -2.4985
1 A J -1.4897
2 E J -2.5064
3 A J -1.6958
4 E J -2.2134
5 A J -2.2719
6 K J -2.3553
7 A J -2.4363
8 K J -3.1792
9 A J -2.5529
10 E J -3.5848
11 A J -3.3496
12 E J -3.6357
13 A J -3.4009
14 K J -3.4169
15 A J -3.1941
16 K J -2.9724
1 A K -1.5694
2 E K -2.6543
3 A K -1.8486
4 E K -2.3367
5 A K -2.4301
6 K K -2.7916
7 A K -2.6117
8 K K -3.4727
9 A K -2.8249
10 E K -3.6624
11 A K -3.2176
12 E K -3.5306
13 A K -3.5055
14 K K -3.3504
15 A K -2.9753
16 K K -2.9993
1 A L -1.5493
2 E L -3.0349
3 A L -2.3460
4 E L -3.2900
5 A L -2.9637
6 K L -3.5066
7 A L -3.0248
8 K L -3.6571
9 A L 0.0000
10 E L -3.8336
11 A L -2.9225
12 E L -3.7108
13 A L 0.0000
14 K L -3.3327
15 A L -2.3331
16 K L -2.9272
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Laboratory of Theory of Biopolymers 2018