Project name: query_structure

Status: done

Started: 2026-03-17 00:22:02
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Chain sequence(s) A: QVQLQESGGGLVQAGGSLRLSCAASGYIFRKYRMGWYRQAPGKEREFVAGINGGSSTNYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCAAYRIVWDLLVYWGQGTQVTVSS
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:35)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:36)
Show buried residues

Minimal score value
-3.1166
Maximal score value
2.8093
Average score
-0.6761
Total score value
-79.7788

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q A -1.3915
2 V A -0.6046
3 Q A -1.5481
4 L A 0.0000
5 Q A -1.0217
6 E A 0.0000
7 S A -0.9063
8 G A -1.0220
9 G A -0.7777
10 G A -0.0549
11 L A 1.0382
12 V A -0.0489
13 Q A -1.3310
14 A A -1.6032
15 G A -1.4470
16 G A -0.9299
17 S A -1.2427
18 L A -0.9073
19 R A -2.1272
20 L A 0.0000
21 S A -0.7376
22 C A 0.0000
23 A A -0.9042
24 A A 0.0000
25 S A -0.6671
26 G A -0.4394
27 Y A 0.3153
28 I A 0.0000
29 F A 0.0000
30 R A -2.9044
31 K A -2.7521
32 Y A -1.1957
33 R A -1.1774
34 M A 0.0000
35 G A 0.0000
36 W A 0.0000
37 Y A 0.1005
38 R A 0.0000
39 Q A -1.6748
40 A A -1.7337
41 P A -1.2276
42 G A -1.7177
43 K A -2.7839
44 E A -3.1166
45 R A -2.2208
46 E A -1.0556
47 F A 0.1146
48 V A 0.0000
49 A A 0.0000
50 G A 0.0000
51 I A 0.0000
52 N A -1.5510
53 G A -2.0332
54 G A -1.3976
55 S A -1.0400
56 S A -0.9975
57 T A -0.9954
58 N A -1.5348
59 Y A -1.1800
60 A A -1.3236
61 D A -2.4709
62 S A -1.7075
63 V A 0.0000
64 K A -2.7618
65 G A -1.7798
66 R A -1.5559
67 F A 0.0000
68 T A -0.9887
69 I A 0.0000
70 S A -0.5271
71 R A -1.3679
72 D A -1.7395
73 N A -2.0368
74 A A -1.5532
75 K A -2.1968
76 N A -1.7583
77 T A -1.1542
78 V A 0.0000
79 Y A -0.6296
80 L A 0.0000
81 Q A -1.2363
82 M A 0.0000
83 N A -1.4566
84 S A -1.3185
85 L A 0.0000
86 K A -2.7387
87 P A -2.0703
88 E A -2.4509
89 D A 0.0000
90 T A -0.9407
91 A A 0.0000
92 V A -0.3322
93 Y A 0.0000
94 Y A -0.2177
95 C A 0.0000
96 A A 0.0000
97 A A 0.0000
98 Y A 0.7540
99 R A 0.6316
100 I A 2.4356
101 V A 2.8093
102 W A 1.9166
103 D A 0.4470
104 L A 1.7191
105 L A 2.1035
106 V A 1.8131
107 Y A 1.3015
108 W A 0.6446
109 G A -0.4699
110 Q A -1.2482
111 G A 0.0000
112 T A -0.9082
113 Q A -0.9397
114 V A 0.0000
115 T A -0.2884
116 V A 0.0000
117 S A -0.8335
118 S A -0.9198
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Laboratory of Theory of Biopolymers 2018