Project name: riapp2

Status: done

Started: 2024-06-18 14:17:35
Settings
Chain sequence(s) A: KCNTATCATQRLANFLVRSSNNLGPVLPPTNVGSNTY
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:08)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:08)
Show buried residues

Minimal score value
-1.7097
Maximal score value
2.6301
Average score
0.1786
Total score value
6.6073

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 K A -1.7097
2 C A -0.6314
3 N A -1.3995
4 T A -0.6996
5 A A -0.1333
6 T A -0.5036
7 C A -0.5884
8 A A -0.5703
9 T A -0.2957
10 Q A -1.4870
11 R A -1.3221
12 L A 1.1628
13 A A 0.8065
14 N A 0.7249
15 F A 2.3955
16 L A 2.6301
17 V A 2.0950
18 R A 0.1902
19 S A 0.8310
20 S A 0.6902
21 N A 0.0639
22 N A -0.6742
23 L A 0.7246
24 G A 0.4223
25 P A 0.8489
26 V A 1.9109
27 L A 1.7105
28 P A 0.5049
29 P A 0.1207
30 T A -0.1943
31 N A -0.5369
32 V A 0.5054
33 G A -0.4591
34 S A -0.5907
35 N A -0.7831
36 T A -0.0944
37 Y A 0.9423
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Laboratory of Theory of Biopolymers 2018