| Chain sequence(s) |
A: DCYCRIPACIAGERRYGTCIYQGRLWAFCC
B: DCYCRIPACIAGERRYGTCIYQGRLWAFCC input PDB |
| Selected Chain(s) | A,B |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:26)
[INFO] Main: Simulation completed successfully. (00:00:26)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 2 | D | A | -1.4602 | |
| 3 | C | A | -0.5554 | |
| 4 | Y | A | 0.0202 | |
| 5 | C | A | 0.7186 | |
| 6 | R | A | 0.6074 | |
| 7 | I | A | 0.9697 | |
| 8 | P | A | 0.6996 | |
| 9 | A | A | 0.2021 | |
| 10 | C | A | 0.3466 | |
| 11 | I | A | 1.4368 | |
| 12 | A | A | 0.4671 | |
| 13 | G | A | -0.3949 | |
| 14 | E | A | -1.0795 | |
| 15 | R | A | -2.2754 | |
| 16 | R | A | -1.9625 | |
| 17 | Y | A | -0.5385 | |
| 18 | G | A | -0.5466 | |
| 19 | T | A | 0.8190 | |
| 20 | C | A | 0.0000 | |
| 21 | I | A | 1.1336 | |
| 22 | Y | A | -0.0705 | |
| 23 | Q | A | -1.1856 | |
| 24 | G | A | -1.1627 | |
| 25 | R | A | -1.1724 | |
| 26 | L | A | 0.9547 | |
| 27 | W | A | 0.6195 | |
| 28 | A | A | 0.0000 | |
| 29 | F | A | 0.0000 | |
| 30 | C | A | 0.0000 | |
| 31 | C | A | -0.6647 | |
| 2 | D | B | -1.5644 | |
| 3 | C | B | -0.6984 | |
| 4 | Y | B | 0.0598 | |
| 5 | C | B | 0.5587 | |
| 6 | R | B | 1.0848 | |
| 7 | I | B | 2.2757 | |
| 8 | P | B | 1.4003 | |
| 9 | A | B | 0.6139 | |
| 10 | C | B | 0.5970 | |
| 11 | I | B | 1.6589 | |
| 12 | A | B | 0.5035 | |
| 13 | G | B | -0.3700 | |
| 14 | E | B | -0.9720 | |
| 15 | R | B | -2.1394 | |
| 16 | R | B | -1.7860 | |
| 17 | Y | B | -0.0985 | |
| 18 | G | B | 0.0990 | |
| 19 | T | B | 0.9340 | |
| 20 | C | B | 0.0000 | |
| 21 | I | B | 0.6827 | |
| 22 | Y | B | -0.4049 | |
| 23 | Q | B | -1.3940 | |
| 24 | G | B | -1.3672 | |
| 25 | R | B | -1.3958 | |
| 26 | L | B | 0.9374 | |
| 27 | W | B | 0.9421 | |
| 28 | A | B | 0.0000 | |
| 29 | F | B | 0.0000 | |
| 30 | C | B | 0.0000 | |
| 31 | C | B | -0.7784 |