Project name: query_structure

Status: done

Started: 2026-03-17 01:18:56
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Chain sequence(s) A: VSDVPRDLEVVAATPTSLLISWDRAYGYPSRYYRITYGETGGNSPVQEFTVPGSKSTATISGLKPGVDYTITVYAVRDEETGEFHWPPISINYRT
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:45)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:46)
Show buried residues

Minimal score value
-4.028
Maximal score value
1.6389
Average score
-0.7798
Total score value
-74.0764

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 V A 1.6389
2 S A 0.2741
3 D A -0.3963
4 V A -0.6131
5 P A 0.0000
6 R A -2.4410
7 D A -3.0107
8 L A 0.0000
9 E A -1.9541
10 V A 0.0754
11 V A 1.5266
12 A A 0.8897
13 A A 0.3068
14 T A -0.5266
15 P A -1.1276
16 T A -0.9998
17 S A -0.5325
18 L A 0.0000
19 L A 0.7460
20 I A 0.0000
21 S A -1.0273
22 W A 0.0000
23 D A -2.4278
24 R A -2.0437
25 A A 0.0000
26 Y A 0.7471
27 G A 0.4016
28 Y A 0.7530
29 P A -0.2789
30 S A 0.0000
31 R A -2.3600
32 Y A -1.3857
33 Y A 0.0000
34 R A -0.5007
35 I A 0.0000
36 T A -0.6018
37 Y A -0.3503
38 G A 0.0000
39 E A -1.5326
40 T A -1.2239
41 G A -1.2192
42 G A -1.3334
43 N A -1.5180
44 S A -0.8494
45 P A -0.3710
46 V A 0.3304
47 Q A -1.0877
48 E A -1.7451
49 F A -0.7229
50 T A -0.2811
51 V A 0.0000
52 P A -1.1420
53 G A 0.0000
54 S A -1.5498
55 K A -2.0033
56 S A -1.4447
57 T A -0.7424
58 A A 0.0000
59 T A 0.2926
60 I A 0.0000
61 S A -0.6573
62 G A -1.0323
63 L A 0.0000
64 K A -2.3792
65 P A -1.6776
66 G A -1.4578
67 V A -1.4544
68 D A -2.0950
69 Y A 0.0000
70 T A -0.7481
71 I A 0.0000
72 T A -0.1296
73 V A 0.0000
74 Y A 0.0005
75 A A 0.0000
76 V A 0.0000
77 R A -2.0478
78 D A -3.7330
79 E A -4.0280
80 E A -3.6734
81 T A -2.1472
82 G A -2.1226
83 E A -2.4502
84 F A 0.1434
85 H A -0.3817
86 W A -0.0602
87 P A -0.0928
88 P A -0.1671
89 I A -0.0322
90 S A -0.4417
91 I A -0.6707
92 N A -1.7017
93 Y A -1.4286
94 R A -2.5287
95 T A -1.5192
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Laboratory of Theory of Biopolymers 2018