Project name: query_structure

Status: done

Started: 2026-03-16 20:28:55
Settings
Chain sequence(s) A: LPAPKNLVVSEVTEDSARLSWTAPDAAFDSFLIQYQESEKVGEAIVLTVPGSERSYDLTGLKPGTEYTVSIYGVKGGHRSNPLSAIFTT
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:35)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:36)
Show buried residues

Minimal score value
-3.0359
Maximal score value
1.8286
Average score
-0.8609
Total score value
-76.6162

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 L A 0.1931
2 P A -0.3379
3 A A -0.8988
4 P A 0.0000
5 K A -1.8523
6 N A -1.4300
7 L A -0.1323
8 V A 1.1706
9 V A 0.5927
10 S A -0.6994
11 E A -2.0813
12 V A -1.0761
13 T A -1.8065
14 E A -3.0359
15 D A -2.6849
16 S A -2.1101
17 A A 0.0000
18 R A -1.4692
19 L A 0.0000
20 S A -0.4015
21 W A 0.0000
22 T A -1.2325
23 A A -1.3624
24 P A -1.3313
25 D A -2.2191
26 A A -1.4376
27 A A -1.0353
28 F A 0.0000
29 D A -2.5793
30 S A -1.5889
31 F A 0.0000
32 L A 0.2632
33 I A 0.0000
34 Q A 0.5025
35 Y A 0.3962
36 Q A -0.8229
37 E A -1.8184
38 S A -1.5039
39 E A -2.7126
40 K A -2.3636
41 V A -0.0842
42 G A -1.0693
43 E A -1.4889
44 A A -0.2600
45 I A 0.9426
46 V A 1.7369
47 L A 1.2168
48 T A 0.3985
49 V A 0.0000
50 P A -1.0796
51 G A 0.0000
52 S A -1.5692
53 E A -1.4674
54 R A -0.8922
55 S A -0.6521
56 Y A -0.7647
57 D A -1.7705
58 L A 0.0000
59 T A -1.3746
60 G A -1.4832
61 L A 0.0000
62 K A -3.0144
63 P A -2.6326
64 G A -1.8782
65 T A -2.4138
66 E A -1.9640
67 Y A 0.0000
68 T A 0.0367
69 V A 0.0000
70 S A 0.0000
71 I A 0.0000
72 Y A 0.0000
73 G A 0.0000
74 V A -1.8995
75 K A -2.2859
76 G A -1.9957
77 G A -2.0490
78 H A -2.4190
79 R A -2.6339
80 S A 0.0000
81 N A -1.4897
82 P A -1.1391
83 L A -0.6824
84 S A 0.0922
85 A A 1.1982
86 I A 1.8286
87 F A 0.0000
88 T A -0.7942
89 T A -1.9137
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Laboratory of Theory of Biopolymers 2018