| Chain sequence(s) |
A: VQLVESGGGSVQAGGSLRLSCTVSGYTDNRYCMGWFRQAPGKEREGVAGINDFGGTTYYVDSVKGRFTISQNNAKNTVYLQMNSLKPEDTAIYYCAIAPRIWGSICSPGTQYNYWGQGTMVTVSS
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:24)
[INFO] Main: Simulation completed successfully. (00:01:25)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | V | A | 0.4630 | |
| 2 | Q | A | -0.4586 | |
| 3 | L | A | 0.0000 | |
| 4 | V | A | 0.4686 | |
| 5 | E | A | 0.0000 | |
| 6 | S | A | -0.3457 | |
| 7 | G | A | -0.9937 | |
| 8 | G | A | -0.5399 | |
| 9 | G | A | -0.4295 | |
| 10 | S | A | -0.4267 | |
| 11 | V | A | -0.7586 | |
| 12 | Q | A | -1.5997 | |
| 13 | A | A | -1.6436 | |
| 14 | G | A | -1.3630 | |
| 15 | G | A | -1.0953 | |
| 16 | S | A | -1.2533 | |
| 17 | L | A | -1.1751 | |
| 18 | R | A | -2.1556 | |
| 19 | L | A | 0.0000 | |
| 20 | S | A | -0.4963 | |
| 21 | C | A | 0.0000 | |
| 22 | T | A | -0.5007 | |
| 23 | V | A | 0.0000 | |
| 24 | S | A | -0.4823 | |
| 25 | G | A | -0.3219 | |
| 26 | Y | A | -0.4918 | |
| 27 | T | A | -0.7854 | |
| 28 | D | A | -1.8764 | |
| 29 | N | A | -2.3639 | |
| 30 | R | A | -2.0262 | |
| 31 | Y | A | -0.8607 | |
| 32 | C | A | 0.0000 | |
| 33 | M | A | 0.0000 | |
| 34 | G | A | 0.0000 | |
| 35 | W | A | 0.0000 | |
| 36 | F | A | 0.0000 | |
| 37 | R | A | 0.0000 | |
| 38 | Q | A | -1.7223 | |
| 39 | A | A | -1.6177 | |
| 40 | P | A | -1.2710 | |
| 41 | G | A | -1.7449 | |
| 42 | K | A | -2.8407 | |
| 43 | E | A | -3.3614 | |
| 44 | R | A | -2.7606 | |
| 45 | E | A | -1.6923 | |
| 46 | G | A | -0.6447 | |
| 47 | V | A | 0.0000 | |
| 48 | A | A | 0.0000 | |
| 49 | G | A | 0.0000 | |
| 50 | I | A | 0.0000 | |
| 51 | N | A | 0.0000 | |
| 52 | D | A | 0.0000 | |
| 53 | F | A | 1.0351 | |
| 54 | G | A | 0.1938 | |
| 55 | G | A | 0.0635 | |
| 56 | T | A | 0.4227 | |
| 57 | T | A | 0.5401 | |
| 58 | Y | A | 0.5107 | |
| 59 | Y | A | -0.4781 | |
| 60 | V | A | -0.9516 | |
| 61 | D | A | -2.2449 | |
| 62 | S | A | -1.7029 | |
| 63 | V | A | 0.0000 | |
| 64 | K | A | -2.4552 | |
| 65 | G | A | -1.7414 | |
| 66 | R | A | -1.4874 | |
| 67 | F | A | 0.0000 | |
| 68 | T | A | -0.8014 | |
| 69 | I | A | 0.0000 | |
| 70 | S | A | -0.5892 | |
| 71 | Q | A | -0.9600 | |
| 72 | N | A | -1.9932 | |
| 73 | N | A | -2.2939 | |
| 74 | A | A | -1.7803 | |
| 75 | K | A | -2.6218 | |
| 76 | N | A | -2.1432 | |
| 77 | T | A | 0.0000 | |
| 78 | V | A | 0.0000 | |
| 79 | Y | A | -0.6443 | |
| 80 | L | A | 0.0000 | |
| 81 | Q | A | -1.2835 | |
| 82 | M | A | 0.0000 | |
| 83 | N | A | -1.4878 | |
| 84 | S | A | -1.2670 | |
| 85 | L | A | 0.0000 | |
| 86 | K | A | -2.3154 | |
| 87 | P | A | -1.8605 | |
| 88 | E | A | -2.3009 | |
| 89 | D | A | 0.0000 | |
| 90 | T | A | -0.7923 | |
| 91 | A | A | 0.0000 | |
| 92 | I | A | 0.2200 | |
| 93 | Y | A | 0.0000 | |
| 94 | Y | A | -0.0305 | |
| 95 | C | A | 0.0000 | |
| 96 | A | A | 0.0000 | |
| 97 | I | A | 0.0000 | |
| 98 | A | A | 0.0000 | |
| 99 | P | A | -0.9347 | |
| 100 | R | A | -0.2865 | |
| 101 | I | A | 1.2994 | |
| 102 | W | A | 1.3325 | |
| 103 | G | A | 0.6164 | |
| 104 | S | A | 0.9828 | |
| 105 | I | A | 1.4630 | |
| 106 | C | A | 0.0000 | |
| 107 | S | A | 0.2336 | |
| 108 | P | A | -0.2702 | |
| 109 | G | A | -0.6919 | |
| 110 | T | A | -0.7077 | |
| 111 | Q | A | -1.5957 | |
| 112 | Y | A | -0.9728 | |
| 113 | N | A | -1.0671 | |
| 114 | Y | A | 0.0586 | |
| 115 | W | A | 0.2902 | |
| 116 | G | A | -0.0644 | |
| 117 | Q | A | -0.9343 | |
| 118 | G | A | 0.0000 | |
| 119 | T | A | 0.1352 | |
| 120 | M | A | 0.5213 | |
| 121 | V | A | 0.0000 | |
| 122 | T | A | -0.5002 | |
| 123 | V | A | 0.0000 | |
| 124 | S | A | -1.1289 | |
| 125 | S | A | -0.8430 |