Project name: RADA16-I_20

Status: done

Started: 2026-06-25 10:30:07
Settings
Chain sequence(s) A: RADARADARADARADA
C: RADARADARADARADA
B: RADARADARADARADA
E: RADARADARADARADA
D: RADARADARADARADA
G: RADARADARADARADA
F: RADARADARADARADA
I: RADARADARADARADA
H: RADARADARADARADA
K: RADARADARADARADA
J: RADARADARADARADA
M: RADARADARADARADA
L: RADARADARADARADA
O: RADARADARADARADA
N: RADARADARADARADA
Q: RADARADARADARADA
P: RADARADARADARADA
S: RADARADARADARADA
R: RADARADARADARADA
T: RADARADARADARADA
input PDB
Selected Chain(s) A,C,B,E,D,G,F,I,H,K,J,M,L,O,N,Q,P,S,R,T
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:08:52)
[INFO]       Main:     Simulation completed successfully.                                          (00:08:59)
Show buried residues

Minimal score value
-4.269
Maximal score value
0.0
Average score
-2.047
Total score value
-655.0309

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 R A -2.7068
2 A A -1.8751
3 D A -2.2057
4 A A -1.9994
5 R A -1.9982
6 A A -1.7374
7 D A -1.8895
8 A A -1.6590
9 R A -2.3457
10 A A -2.2438
11 D A -2.3486
12 A A -2.2085
13 R A -2.8375
14 A A -2.3920
15 D A -2.5582
16 A A -1.4816
1 R B -2.5759
2 A B -1.7728
3 D B -1.9449
4 A B -1.8880
5 R B -1.9167
6 A B 0.0000
7 D B -1.8739
8 A B -1.7275
9 R B -2.4391
10 A B 0.0000
11 D B -2.3742
12 A B -2.1811
13 R B -3.0277
14 A B -2.4303
15 D B -2.7524
16 A B -1.4870
1 R C -2.5815
2 A C -1.7766
3 D C -1.9756
4 A C -1.9195
5 R C -1.9513
6 A C 0.0000
7 D C -1.9207
8 A C -1.6865
9 R C -2.5276
10 A C 0.0000
11 D C -2.4225
12 A C -2.2213
13 R C -3.0505
14 A C -2.4555
15 D C -2.7595
16 A C -1.4834
1 R D -2.5711
2 A D -1.7542
3 D D -1.9698
4 A D -1.9199
5 R D -1.9595
6 A D 0.0000
7 D D -1.9443
8 A D -1.6998
9 R D -2.5764
10 A D 0.0000
11 D D -2.4125
12 A D -2.2054
13 R D -3.0471
14 A D -2.4594
15 D D -2.7538
16 A D -1.4720
1 R E -2.5600
2 A E -1.7631
3 D E -1.9450
4 A E -1.9067
5 R E -1.9351
6 A E 0.0000
7 D E -1.9556
8 A E -1.6778
9 R E -2.5202
10 A E 0.0000
11 D E -2.4044
12 A E -2.1949
13 R E -3.0241
14 A E -2.4449
15 D E -2.7405
16 A E -1.4697
1 R F -2.5422
2 A F -1.7247
3 D F -1.8696
4 A F -1.8530
5 R F -1.9314
6 A F 0.0000
7 D F -1.9141
8 A F -1.6269
9 R F -2.4832
10 A F 0.0000
11 D F -2.3469
12 A F -2.1781
13 R F -3.0194
14 A F -2.4379
15 D F -2.7510
16 A F -1.4523
1 R G -2.5692
2 A G -1.7453
3 D G -1.8395
4 A G -1.8606
5 R G -1.9413
6 A G 0.0000
7 D G -1.8968
8 A G -1.5979
9 R G -2.4106
10 A G 0.0000
11 D G -2.3256
12 A G -2.1590
13 R G -2.9996
14 A G -2.4355
15 D G -2.7345
16 A G -1.4699
1 R H -2.5568
2 A H -1.7216
3 D H -1.8293
4 A H -1.8513
5 R H -1.9074
6 A H 0.0000
7 D H -1.8727
8 A H -1.6021
9 R H -2.3901
10 A H 0.0000
11 D H -2.3606
12 A H -2.1493
13 R H -3.0102
14 A H -2.4379
15 D H -2.7470
16 A H -1.4749
1 R I -2.3642
2 A I -1.7199
3 D I -1.8043
4 A I -1.8441
5 R I -1.9319
6 A I 0.0000
7 D I -1.8780
8 A I -1.6391
9 R I -2.4618
10 A I 0.0000
11 D I -2.3464
12 A I -2.1853
13 R I -3.0222
14 A I -2.4159
15 D I -2.7446
16 A I -1.4720
1 R J -2.3452
2 A J -1.7308
3 D J -1.8254
4 A J -1.8342
5 R J -1.8956
6 A J 0.0000
7 D J -1.8730
8 A J -1.6632
9 R J -2.5173
10 A J 0.0000
11 D J -2.3478
12 A J -2.2104
13 R J -2.8554
14 A J -2.4086
15 D J -2.7419
16 A J -1.4807
1 R K -2.5987
2 A K -1.7942
3 D K -1.9679
4 A K -1.9114
5 R K -1.9175
6 A K 0.0000
7 D K -1.9167
8 A K -1.6648
9 R K -2.5596
10 A K 0.0000
11 D K -2.3586
12 A K -2.2324
13 R K -2.8581
14 A K -2.4065
15 D K -2.7498
16 A K -1.4869
1 R L -2.5637
2 A L -1.7660
3 D L -1.9038
4 A L -1.8577
5 R L -2.0477
6 A L 0.0000
7 D L -1.8599
8 A L -1.4988
9 R L -2.2975
10 A L 0.0000
11 D L -2.3255
12 A L -2.1008
13 R L -2.9933
14 A L -2.4084
15 D L -2.7252
16 A L -1.4763
1 R M -2.5357
2 A M -1.6945
3 D M -1.8281
4 A M -1.6959
5 R M -1.8316
6 A M 0.0000
7 D M 0.0000
8 A M -1.3181
9 R M -2.0946
10 A M 0.0000
11 D M -2.1830
12 A M -2.0100
13 R M -2.9863
14 A M -2.3844
15 D M -2.7031
16 A M -1.4594
1 R N -2.3796
2 A N -1.7216
3 D N -1.7492
4 A N -1.6466
5 R N -1.7989
6 A N 0.0000
7 D N -1.5960
8 A N -1.5955
9 R N -2.1504
10 A N 0.0000
11 D N -2.0739
12 A N -2.0887
13 R N -2.8243
14 A N -2.2976
15 D N -2.6437
16 A N -1.3903
1 R O -2.5054
2 A O -2.0648
3 D O -2.3652
4 A O -2.1567
5 R O -3.0693
6 A O -2.4246
7 D O -2.4534
8 A O -2.0852
9 R O -2.9731
10 A O 0.0000
11 D O -2.5582
12 A O -2.3044
13 R O -3.1711
14 A O -2.4893
15 D O -2.4435
16 A O -1.4535
1 R P -3.1055
2 A P -2.5538
3 D P -3.6055
4 A P -3.2465
5 R P -4.1112
6 A P -3.4629
7 D P -4.2490
8 A P -3.4435
9 R P -4.2690
10 A P -3.4645
11 D P -4.0125
12 A P -3.2395
13 R P -3.5880
14 A P -2.5256
15 D P -3.0185
16 A P -1.6399
1 R Q -2.8309
2 A Q -2.1637
3 D Q -3.0494
4 A Q -2.5522
5 R Q -2.5558
6 A Q -2.4621
7 D Q -3.4083
8 A Q -2.6630
9 R Q -2.8540
10 A Q -2.6650
11 D Q -3.4438
12 A Q -2.9615
13 R Q -3.3387
14 A Q -2.3660
15 D Q -2.8588
16 A Q -1.6267
1 R R -2.2554
2 A R -1.7248
3 D R -1.8847
4 A R -1.7567
5 R R -1.9039
6 A R -1.7648
7 D R -1.5880
8 A R -1.8913
9 R R -2.3984
10 A R -2.4948
11 D R -2.7684
12 A R -2.6300
13 R R -3.0911
14 A R -2.4343
15 D R -2.6052
16 A R -1.5252
1 R S -2.7918
2 A S -2.0387
3 D S -2.5131
4 A S -2.1279
5 R S -2.0853
6 A S -2.1409
7 D S -1.8754
8 A S -1.6901
9 R S -2.3039
10 A S -2.3211
11 D S -2.4624
12 A S -2.2471
13 R S -2.8813
14 A S -2.4400
15 D S -2.5894
16 A S -1.4966
1 R T -2.1502
2 A T -1.7529
3 D T -1.9198
4 A T -1.7002
5 R T -1.8691
6 A T 0.0000
7 D T -1.4776
8 A T -1.5855
9 R T -2.2983
10 A T 0.0000
11 D T -2.3529
12 A T -2.2527
13 R T -3.0543
14 A T -2.4126
15 D T -2.7465
16 A T -1.4705
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Laboratory of Theory of Biopolymers 2018