Project name: CM403-426 Mod4

Status: done

Started: 2026-02-23 10:15:25
Settings
Chain sequence(s) A: DNAITNLLAGRVSQMRMLPLGVLS
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:28)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:29)
Show buried residues

Minimal score value
-1.9686
Maximal score value
2.7303
Average score
0.4553
Total score value
10.9275

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 D A -1.9686
2 N A -1.6288
3 A A -0.1871
4 I A 1.1813
5 T A -0.1704
6 N A -0.6978
7 L A 0.7915
8 L A 1.1118
9 A A 0.4302
10 G A -0.4999
11 R A -1.1259
12 V A 0.4421
13 S A -0.4022
14 Q A -0.1088
15 M A 0.2466
16 R A -0.4851
17 M A 1.2553
18 L A 1.7530
19 P A 0.7825
20 L A 1.9760
21 G A 1.6395
22 V A 2.7303
23 L A 2.5345
24 S A 1.3275
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Laboratory of Theory of Biopolymers 2018