Project name: Lesofavumab

Status: done

Started: 2026-03-23 04:30:24
Settings
Chain sequence(s) H: EVQLVQSGAEVKKPGESLKISCKVSGYSFTSQWIGWVRQMPGKGLEWIGMMYPGESETIYSPSFQGQVTISADNSISTAYLQWSSLKASDTAIYYCASGPGYSGYHYGWFDTWGQGTLVTVSS
L: DIVMTQSPLSLPVTPGEPASISCRSSQSLLRSNGYNYLDWYLQKPGQSPQLLIYLGSNRASGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCMQALQTPYTFGQGTKLEIK
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:01)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:03)
Show buried residues

Minimal score value
-2.5438
Maximal score value
1.236
Average score
-0.4653
Total score value
-109.3465

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 E H -1.9220
2 V H -1.0820
3 Q H -1.0630
4 L H 0.0000
5 V H 0.2555
6 Q H 0.0000
7 S H -0.4170
8 G H -0.4236
9 A H 0.3956
11 E H 0.3952
12 V H 1.2360
13 K H -0.7763
14 K H -1.8933
15 P H -1.7661
16 G H -1.8063
17 E H -2.2657
18 S H -1.6514
19 L H 0.0000
20 K H -1.3862
21 I H 0.0000
22 S H -0.4285
23 C H 0.0000
24 K H -0.5598
25 V H 0.0000
26 S H -0.7671
27 G H -1.0519
28 Y H -0.4475
29 S H -0.3276
30 F H 0.0000
35 T H -0.6718
36 S H -0.0945
37 Q H 0.1444
38 W H 0.0054
39 I H 0.0000
40 G H 0.0000
41 W H 0.0000
42 V H 0.0000
43 R H -0.2644
44 Q H 0.0000
45 M H -0.4951
46 P H -0.7031
47 G H -1.3098
48 K H -2.2194
49 G H -1.3771
50 L H 0.0000
51 E H -0.7317
52 W H 0.0000
53 I H 0.0000
54 G H 0.0000
55 M H 0.0000
56 M H 0.0000
57 Y H -0.8802
58 P H 0.0000
59 G H -1.5850
62 E H -2.5438
63 S H -2.1040
64 E H -2.3490
65 T H -0.8910
66 I H -0.0793
67 Y H 0.0582
68 S H 0.0000
69 P H -0.8945
70 S H -0.7124
71 F H -0.8778
72 Q H -1.5378
74 G H -1.3746
75 Q H -1.4810
76 V H 0.0000
77 T H -0.7077
78 I H 0.0000
79 S H -0.5249
80 A H -0.4214
81 D H -0.7010
82 N H -0.6933
83 S H 0.1815
84 I H 1.2279
85 S H 0.0319
86 T H 0.0000
87 A H 0.0000
88 Y H -0.4549
89 L H 0.0000
90 Q H -1.0571
91 W H 0.0000
92 S H -1.0842
93 S H -1.3884
94 L H 0.0000
95 K H -1.4557
96 A H -0.7990
97 S H -0.4227
98 D H 0.0000
99 T H 0.1738
100 A H 0.0000
101 I H 0.7052
102 Y H 0.0000
103 Y H 0.0000
104 C H 0.0000
105 A H 0.0000
106 S H 0.0000
107 G H 0.0000
108 P H 0.0000
109 G H 0.0000
110 Y H 1.2122
111 S H 0.5458
111A G H 0.5517
112B Y H 1.0980
112A H H 0.4585
112 Y H 0.6526
113 G H 0.0000
114 W H 0.0543
115 F H 0.0000
116 D H -0.8987
117 T H -0.6971
118 W H 0.0000
119 G H 0.0000
120 Q H -1.2091
121 G H -0.3311
122 T H 0.0000
123 L H 1.0969
124 V H 0.0000
125 T H 0.4025
126 V H 0.0000
127 S H -0.6853
128 S H -0.8230
1 D L -1.5651
2 I L 0.0000
3 V L 0.8144
4 M L 0.0000
5 T L -0.5378
6 Q L 0.0000
7 S L -0.2141
8 P L 0.2168
9 L L 0.9768
10 S L 0.1957
11 L L -0.0041
12 P L -0.6444
13 V L 0.0000
14 T L -1.2632
15 P L -1.4048
16 G L -1.6863
17 E L -1.9484
18 P L -1.5547
19 A L 0.0000
20 S L -0.6356
21 I L 0.0000
22 S L -0.8327
23 C L 0.0000
24 R L -2.2487
25 S L 0.0000
26 S L -0.6633
27 Q L -0.8573
28 S L -0.6250
29 L L 0.0000
30 L L 0.2405
31 R L -0.5502
32 S L -0.9267
34 N L -1.3453
35 G L -0.8350
36 Y L -0.0415
37 N L 0.0200
38 Y L 0.0000
39 L L 0.0000
40 D L 0.0000
41 W L 0.0000
42 Y L 0.0000
43 L L 0.0000
44 Q L -0.7176
45 K L -1.1050
46 P L -0.9877
47 G L -1.3444
48 Q L -1.8620
49 S L -1.1904
50 P L 0.0000
51 Q L -0.8226
52 L L 0.0000
53 L L 0.0000
54 I L 0.0000
55 Y L -0.1677
56 L L 0.0000
57 G L 0.0000
65 S L -0.6237
66 N L -0.8932
67 R L -1.6039
68 A L -0.9230
69 S L -0.8137
70 G L -0.8792
71 V L -0.9306
72 P L -1.1901
74 D L -2.1628
75 R L 0.0000
76 F L 0.0000
77 S L -1.1100
78 G L -0.7539
79 S L -0.7645
80 G L -1.0785
83 S L -0.7851
84 G L -0.6469
85 T L -1.3560
86 D L -2.0827
87 F L 0.0000
88 T L -1.0044
89 L L 0.0000
90 K L -1.1576
91 I L 0.0000
92 S L -1.6321
93 R L -2.1978
94 V L 0.0000
95 E L -1.7998
96 A L -1.0512
97 E L -1.7127
98 D L 0.0000
99 V L -0.2004
100 G L -0.6158
101 V L -0.0669
102 Y L 0.0000
103 Y L 0.0000
104 C L 0.0000
105 M L 0.0000
106 Q L 0.0000
107 A L 0.0000
108 L L 0.3763
109 Q L -0.5739
114 T L -0.4189
115 P L -0.4601
116 Y L -0.1426
117 T L -0.0242
118 F L 0.1192
119 G L 0.0000
120 Q L -0.9909
121 G L 0.0000
122 T L 0.0000
123 K L -0.5983
124 L L 0.0000
125 E L -0.3621
126 I L 0.0168
127 K L -1.4498
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Laboratory of Theory of Biopolymers 2018