Project name: query_structure

Status: done

Started: 2026-03-16 20:33:22
Settings
Chain sequence(s) A: LPAPKNLVVSRVTEDSARLSWTAPDAAFDSFAIAYPEWPPQGEAIVLTVPGSERSYDLTGLKPGTEYFVVIYGVKGGSYSAPLSAIFTT
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:41)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:42)
Show buried residues

Minimal score value
-2.8408
Maximal score value
2.3039
Average score
-0.5115
Total score value
-45.5214

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 L A 1.4200
2 P A 0.3314
3 A A 0.0703
4 P A 0.0000
5 K A -2.1192
6 N A -1.5467
7 L A -0.1708
8 V A 1.2714
9 V A 0.7314
10 S A -0.5697
11 R A -1.8202
12 V A -0.9487
13 T A -1.6792
14 E A -2.7060
15 D A -2.4724
16 S A -1.9509
17 A A 0.0000
18 R A -1.1841
19 L A 0.0000
20 S A -0.3450
21 W A 0.0000
22 T A -1.3140
23 A A -1.4369
24 P A -1.4046
25 D A -2.2613
26 A A -1.4192
27 A A -1.0044
28 F A 0.0000
29 D A -2.4961
30 S A -1.2407
31 F A 0.0000
32 A A 0.0000
33 I A 0.0000
34 A A 0.0000
35 Y A 1.0569
36 P A -0.1002
37 E A -0.8083
38 W A 0.1575
39 P A -0.4805
40 P A -1.2792
41 Q A -1.9272
42 G A -1.8515
43 E A -1.8268
44 A A -0.1388
45 I A 1.5302
46 V A 2.2472
47 L A 1.3321
48 T A 0.4055
49 V A 0.0000
50 P A -1.1055
51 G A 0.0000
52 S A -1.5853
53 E A -1.4587
54 R A -1.1374
55 S A -0.6089
56 Y A -0.7311
57 D A -1.7244
58 L A 0.0000
59 T A -1.3791
60 G A -1.4137
61 L A 0.0000
62 K A -2.8408
63 P A -2.3759
64 G A -1.6942
65 T A -1.5078
66 E A -0.5294
67 Y A 0.0000
68 F A 1.1272
69 V A 0.0000
70 V A 0.8807
71 I A 0.0000
72 Y A 0.7154
73 G A 0.0000
74 V A -0.2560
75 K A -1.2629
76 G A -1.2985
77 G A -0.9232
78 S A 0.0145
79 Y A 1.2746
80 S A 0.0000
81 A A 0.6143
82 P A -0.0120
83 L A -0.3642
84 S A 0.4129
85 A A 1.3924
86 I A 2.3039
87 F A 0.0000
88 T A -0.3956
89 T A -1.7040
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Laboratory of Theory of Biopolymers 2018