Project name: query_structure

Status: done

Started: 2026-03-16 23:00:55
Settings
Chain sequence(s) A: CLGIGSCNNFAGCGYAIVCFW
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:03)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:03)
Show buried residues

Minimal score value
-1.1591
Maximal score value
4.2419
Average score
1.9971
Total score value
41.9385

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 C A 3.6939
2 L A 4.0609
3 G A 3.5715
4 I A 3.4733
5 G A 1.7636
6 S A 0.1721
7 C A 0.4354
8 N A -1.1591
9 N A -0.7217
10 F A 1.2496
11 A A 0.4140
12 G A -0.0388
13 C A 0.6294
14 G A 0.6445
15 Y A 2.5046
16 A A 2.8563
17 I A 4.2419
18 V A 4.0331
19 C A 3.9590
20 F A 3.6948
21 W A 2.4602
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018