Project name: 5fb7a504a74f2b1

Status: done

Started: 2025-03-11 02:34:13
Settings
Chain sequence(s) A: GRKKRRQRRRPPQ
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:08)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:08)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:08)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:08)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:08)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:24)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:25)
Show buried residues

Minimal score value
-4.811
Maximal score value
-1.1946
Average score
-3.5465
Total score value
-42.5583

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 G A -1.8994
2 R A -3.1711
3 K A -4.2008
4 K A -4.0479
5 R A -4.8110
6 R A -4.0938
7 Q A -3.9151
8 R A -4.1974
9 R A -4.3695
10 R A -4.1964
11 P A -2.4613
12 P A -1.1946
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Laboratory of Theory of Biopolymers 2018