Chain sequence(s) |
A: GRKKRRQRRRPPQ
input PDB |
Selected Chain(s) | A |
Distance of aggregation | 10 Å |
FoldX usage | Yes |
Dynamic mode | No |
Automated mutations | No |
Downloads | Download all the data |
Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:08) [WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow to prevent this behavior) (00:00:08) [INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:08) [INFO] runJob: Creating pdb object from: input.pdb (00:00:08) [INFO] FoldX: Starting FoldX energy minimalization (00:00:08) [INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:24) [INFO] Main: Simulation completed successfully. (00:00:25) |
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
residue index | residue name | chain | Aggrescan3D score | mutation |
---|---|---|---|---|
residue index | residue name | chain | Aggrescan3D score | |
1 | G | A | -1.8994 | |
2 | R | A | -3.1711 | |
3 | K | A | -4.2008 | |
4 | K | A | -4.0479 | |
5 | R | A | -4.8110 | |
6 | R | A | -4.0938 | |
7 | Q | A | -3.9151 | |
8 | R | A | -4.1974 | |
9 | R | A | -4.3695 | |
10 | R | A | -4.1964 | |
11 | P | A | -2.4613 | |
12 | P | A | -1.1946 |