| Chain sequence(s) |
A: KKGHKGH
C: KKGHKGH B: KKGHKGH D: KKGHKGH input PDB |
| Selected Chain(s) | A,C,B,D |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:04:08)
[INFO] Main: Simulation completed successfully. (00:04:09)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | K | A | -5.5754 | |
| 2 | K | A | -5.7438 | |
| 3 | G | A | 0.0000 | |
| 4 | H | A | -4.6989 | |
| 5 | K | A | -4.2707 | |
| 6 | G | A | -2.5453 | |
| 7 | H | A | -1.9262 | |
| 1 | K | B | -6.6264 | |
| 2 | K | B | -5.8216 | |
| 3 | G | B | 0.0000 | |
| 4 | H | B | -4.6729 | |
| 5 | K | B | -3.9645 | |
| 6 | G | B | 0.0000 | |
| 7 | H | B | -2.2017 | |
| 1 | K | C | -3.6808 | |
| 2 | K | C | -4.4669 | |
| 3 | G | C | 0.0000 | |
| 4 | H | C | -5.1953 | |
| 5 | K | C | -4.3606 | |
| 6 | G | C | 0.0000 | |
| 7 | H | C | -2.7902 | |
| 1 | K | D | -5.0139 | |
| 2 | K | D | -5.6325 | |
| 3 | G | D | -5.4924 | |
| 4 | H | D | -5.4475 | |
| 5 | K | D | -4.5766 | |
| 6 | G | D | -3.2638 | |
| 7 | H | D | -2.9722 |