Project name: VHL_WT

Status: done

Started: 2026-01-10 19:42:45
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Chain sequence(s) A: MEAGRPRPVLRSVNSREPSQVIFCNRSPRVVLPVWLNFDGEPQPYPTLPPGTGRRIHSYRGHLWLFRDAGTHDGLLVNQTELFVPSLNVDGQPIFANITLPVYTLKERCLQVVRSLVKPENYRRLDIVRSLYEDLEDHPNVQKDLERLTQERIAHQRMGD
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:03:38)
[INFO]       Main:     Simulation completed successfully.                                          (00:03:39)
Show buried residues

Minimal score value
-4.3053
Maximal score value
1.8894
Average score
-1.0385
Total score value
-166.158

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 M A 0.1301
2 E A -1.7344
3 A A -1.2690
4 G A -2.1116
5 R A -2.9728
6 P A -2.0836
7 R A -2.7366
8 P A -1.8228
9 V A -0.4937
10 L A 0.0000
11 R A -1.2129
12 S A 0.0000
13 V A 0.7221
14 N A -1.0800
15 S A -1.3811
16 R A -2.3426
17 E A -1.7956
18 P A -1.2988
19 S A 0.0000
20 Q A -1.1409
21 V A 0.0000
22 I A -0.6109
23 F A 0.0000
24 C A 0.0000
25 N A 0.0000
26 R A -2.2098
27 S A 0.0000
28 P A -1.0015
29 R A -0.9857
30 V A -0.2035
31 V A 0.0000
32 L A 0.0281
33 P A 0.0000
34 V A 0.0000
35 W A -0.4306
36 L A 0.0000
37 N A -1.1992
38 F A -0.8006
39 D A -2.4619
40 G A -2.0322
41 E A -2.8383
42 P A -1.7250
43 Q A -1.1977
44 P A -0.5496
45 Y A 0.1151
46 P A -0.1206
47 T A 0.0529
48 L A 0.0000
49 P A -0.6454
50 P A -1.1086
51 G A -1.3170
52 T A -0.9453
53 G A -1.4118
54 R A -1.5763
55 R A -2.2281
56 I A 0.0000
57 H A -1.5257
58 S A 0.0000
59 Y A -0.7325
60 R A -0.8532
61 G A 0.1148
62 H A 0.0000
63 L A 0.0000
64 W A 0.0000
65 L A 0.0000
66 F A 0.0000
67 R A 0.0000
68 D A 0.0000
69 A A -0.3755
70 G A -0.6320
71 T A -0.9145
72 H A -1.0085
73 D A -0.9146
74 G A -0.6831
75 L A 0.0000
76 L A -0.9249
77 V A 0.0000
78 N A -1.4920
79 Q A -1.8443
80 T A -1.6278
81 E A -2.0318
82 L A -0.4050
83 F A 0.0000
84 V A 1.7890
85 P A 0.0000
86 S A 0.4228
87 L A 0.2281
88 N A -0.3348
89 V A 0.4686
90 D A -1.5175
91 G A -1.3737
92 Q A -1.3481
93 P A -0.5768
94 I A 0.4723
95 F A 0.4821
96 A A 0.0000
97 N A -0.9983
98 I A 0.0000
99 T A -0.7142
100 L A 0.3651
101 P A 0.7586
102 V A 1.8894
103 Y A 0.5463
104 T A 0.1192
105 L A 0.4319
106 K A -1.2547
107 E A -1.3387
108 R A -0.8493
109 C A -0.1195
110 L A 0.0000
111 Q A -0.0152
112 V A 1.4365
113 V A 0.9946
114 R A 0.0168
115 S A 0.7315
116 L A 1.5609
117 V A -0.0760
118 K A -2.1396
119 P A -2.3901
120 E A -3.4415
121 N A -3.1444
122 Y A 0.0000
123 R A -3.8199
124 R A -3.3929
125 L A -1.8533
126 D A -1.9342
127 I A -0.1863
128 V A 0.7009
129 R A -1.7093
130 S A -0.9362
131 L A -1.2483
132 Y A 0.0000
133 E A -3.4630
134 D A -2.8527
135 L A 0.0000
136 E A -3.2646
137 D A -3.3087
138 H A -2.6004
139 P A -1.9631
140 N A -2.3141
141 V A -2.0983
142 Q A -3.2658
143 K A -3.7751
144 D A -3.2583
145 L A 0.0000
146 E A -4.2068
147 R A -4.3053
148 L A -2.9679
149 T A -2.6295
150 Q A -3.3306
151 E A -3.6894
152 R A -3.0282
153 I A -1.6201
154 A A -2.1405
155 H A -2.8995
156 Q A -3.1928
157 R A -2.8714
158 M A -1.2355
159 G A -2.0364
160 D A -2.6635
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Laboratory of Theory of Biopolymers 2018