| Chain sequence(s) |
H: QVQLVESGGGVVQPGKSLRLSCAASGFTFSGYGMHWVRQAPGKGLEWVALISYDESNKYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAKVKFYDPTAPNDYWGQGTLVTVSS
L: DIQMTQSPSSLSASVGDRVTITCRTSQSISSYLNWYQQKPGKAPKLLIYAASSLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQSYSAPRTFGQGTKVEIK input PDB |
| Selected Chain(s) | H,L |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:12)
[INFO] Main: Simulation completed successfully. (00:01:14)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | H | -1.4603 | |
| 2 | V | H | -0.8146 | |
| 3 | Q | H | -1.0910 | |
| 4 | L | H | 0.0000 | |
| 5 | V | H | 0.4608 | |
| 6 | E | H | 0.0000 | |
| 7 | S | H | -0.2513 | |
| 8 | G | H | -0.5254 | |
| 9 | G | H | 0.2451 | |
| 11 | G | H | 0.9082 | |
| 12 | V | H | 1.7431 | |
| 13 | V | H | 0.0490 | |
| 14 | Q | H | -1.1773 | |
| 15 | P | H | -1.7490 | |
| 16 | G | H | -1.9022 | |
| 17 | K | H | -2.2168 | |
| 18 | S | H | -1.4348 | |
| 19 | L | H | -0.7659 | |
| 20 | R | H | -1.2156 | |
| 21 | L | H | 0.0000 | |
| 22 | S | H | -0.2244 | |
| 23 | C | H | 0.0000 | |
| 24 | A | H | -0.3287 | |
| 25 | A | H | 0.0000 | |
| 26 | S | H | -0.9973 | |
| 27 | G | H | -1.0793 | |
| 28 | F | H | -0.4062 | |
| 29 | T | H | -0.2106 | |
| 30 | F | H | 0.0000 | |
| 35 | S | H | -0.5696 | |
| 36 | G | H | 0.4214 | |
| 37 | Y | H | 0.6860 | |
| 38 | G | H | 0.1978 | |
| 39 | M | H | 0.0000 | |
| 40 | H | H | 0.0000 | |
| 41 | W | H | 0.0000 | |
| 42 | V | H | 0.0000 | |
| 43 | R | H | 0.0000 | |
| 44 | Q | H | -0.7066 | |
| 45 | A | H | -1.0823 | |
| 46 | P | H | -0.8658 | |
| 47 | G | H | -1.4786 | |
| 48 | K | H | -2.3603 | |
| 49 | G | H | -1.5851 | |
| 50 | L | H | 0.0000 | |
| 51 | E | H | -1.0159 | |
| 52 | W | H | 0.0000 | |
| 53 | V | H | 0.0000 | |
| 54 | A | H | 0.0000 | |
| 55 | L | H | 0.3062 | |
| 56 | I | H | 0.0000 | |
| 57 | S | H | -0.2193 | |
| 58 | Y | H | 0.3671 | |
| 59 | D | H | -1.1611 | |
| 62 | E | H | -1.4264 | |
| 63 | S | H | -1.2153 | |
| 64 | N | H | -1.1470 | |
| 65 | K | H | -0.5772 | |
| 66 | Y | H | 0.2234 | |
| 67 | Y | H | -0.4771 | |
| 68 | A | H | 0.0000 | |
| 69 | D | H | -2.5409 | |
| 70 | S | H | -1.7169 | |
| 71 | V | H | 0.0000 | |
| 72 | K | H | -2.2896 | |
| 74 | G | H | -1.6286 | |
| 75 | R | H | -1.3538 | |
| 76 | F | H | 0.0000 | |
| 77 | T | H | -0.6102 | |
| 78 | I | H | 0.0000 | |
| 79 | S | H | -0.4024 | |
| 80 | R | H | 0.0000 | |
| 81 | D | H | -1.5602 | |
| 82 | N | H | -1.6666 | |
| 83 | S | H | -1.5693 | |
| 84 | K | H | -2.3904 | |
| 85 | N | H | -1.8454 | |
| 86 | T | H | -1.0130 | |
| 87 | L | H | 0.0000 | |
| 88 | Y | H | -0.2449 | |
| 89 | L | H | 0.0000 | |
| 90 | Q | H | -0.7909 | |
| 91 | M | H | 0.0000 | |
| 92 | N | H | -1.5240 | |
| 93 | S | H | -1.5781 | |
| 94 | L | H | 0.0000 | |
| 95 | R | H | -2.4051 | |
| 96 | A | H | -1.6428 | |
| 97 | E | H | -2.2417 | |
| 98 | D | H | 0.0000 | |
| 99 | T | H | -0.3913 | |
| 100 | A | H | 0.0000 | |
| 101 | V | H | 0.5449 | |
| 102 | Y | H | 0.0000 | |
| 103 | Y | H | 0.0000 | |
| 104 | C | H | 0.0000 | |
| 105 | A | H | 0.0000 | |
| 106 | K | H | 0.0000 | |
| 107 | V | H | 0.0000 | |
| 108 | K | H | 0.1318 | |
| 109 | F | H | 0.7585 | |
| 110 | Y | H | 1.2195 | |
| 111 | D | H | -0.2210 | |
| 112A | P | H | -0.1216 | |
| 112 | T | H | 0.2330 | |
| 113 | A | H | 0.0000 | |
| 114 | P | H | 0.0000 | |
| 115 | N | H | 0.0000 | |
| 116 | D | H | -0.0788 | |
| 117 | Y | H | 0.1334 | |
| 118 | W | H | -0.2485 | |
| 119 | G | H | 0.0000 | |
| 120 | Q | H | -1.4346 | |
| 121 | G | H | -0.4176 | |
| 122 | T | H | 0.3789 | |
| 123 | L | H | 1.4751 | |
| 124 | V | H | 0.0000 | |
| 125 | T | H | 0.4623 | |
| 126 | V | H | 0.0000 | |
| 127 | S | H | -0.5341 | |
| 128 | S | H | -0.5008 | |
| 1 | D | L | -2.4264 | |
| 2 | I | L | 0.0000 | |
| 3 | Q | L | -2.2377 | |
| 4 | M | L | 0.0000 | |
| 5 | T | L | -1.4325 | |
| 6 | Q | L | 0.0000 | |
| 7 | S | L | -0.7356 | |
| 8 | P | L | -0.5268 | |
| 9 | S | L | -0.8779 | |
| 10 | S | L | -1.0631 | |
| 11 | L | L | -0.6579 | |
| 12 | S | L | -0.8158 | |
| 13 | A | L | 0.0000 | |
| 14 | S | L | -0.0488 | |
| 15 | V | L | 0.8640 | |
| 16 | G | L | -0.3601 | |
| 17 | D | L | -1.1955 | |
| 18 | R | L | -2.0579 | |
| 19 | V | L | 0.0000 | |
| 20 | T | L | -0.6035 | |
| 21 | I | L | 0.0000 | |
| 22 | T | L | -0.8178 | |
| 23 | C | L | 0.0000 | |
| 24 | R | L | -2.7070 | |
| 25 | T | L | 0.0000 | |
| 26 | S | L | -1.7970 | |
| 27 | Q | L | -1.6751 | |
| 28 | S | L | -0.8885 | |
| 29 | I | L | 0.0000 | |
| 36 | S | L | -0.1650 | |
| 37 | S | L | -0.0222 | |
| 38 | Y | L | 0.6537 | |
| 39 | L | L | 0.0000 | |
| 40 | N | L | 0.0000 | |
| 41 | W | L | 0.0000 | |
| 42 | Y | L | 0.0000 | |
| 43 | Q | L | -0.8893 | |
| 44 | Q | L | 0.0000 | |
| 45 | K | L | -1.6487 | |
| 46 | P | L | -1.2449 | |
| 47 | G | L | -1.6630 | |
| 48 | K | L | -2.5548 | |
| 49 | A | L | -1.5642 | |
| 50 | P | L | 0.0000 | |
| 51 | K | L | -1.3102 | |
| 52 | L | L | 0.0000 | |
| 53 | L | L | 0.0000 | |
| 54 | I | L | 0.0000 | |
| 55 | Y | L | 0.2623 | |
| 56 | A | L | 0.1798 | |
| 57 | A | L | 0.0000 | |
| 65 | S | L | -0.1981 | |
| 66 | S | L | 0.0830 | |
| 67 | L | L | 0.2983 | |
| 68 | Q | L | -0.2620 | |
| 69 | S | L | -0.4033 | |
| 70 | G | L | -0.5594 | |
| 71 | V | L | 0.0000 | |
| 72 | P | L | -0.3872 | |
| 74 | S | L | -0.4215 | |
| 75 | R | L | -0.6981 | |
| 76 | F | L | 0.0000 | |
| 77 | S | L | -0.3329 | |
| 78 | G | L | -0.2661 | |
| 79 | S | L | -0.6545 | |
| 80 | G | L | -0.9683 | |
| 83 | S | L | -0.9194 | |
| 84 | G | L | -1.0023 | |
| 85 | T | L | -1.5892 | |
| 86 | D | L | -2.0615 | |
| 87 | F | L | 0.0000 | |
| 88 | T | L | -0.7389 | |
| 89 | L | L | 0.0000 | |
| 90 | T | L | -0.6116 | |
| 91 | I | L | 0.0000 | |
| 92 | S | L | -1.1877 | |
| 93 | S | L | -0.9362 | |
| 94 | L | L | 0.0000 | |
| 95 | Q | L | -0.7049 | |
| 96 | P | L | -0.5856 | |
| 97 | E | L | -1.8639 | |
| 98 | D | L | 0.0000 | |
| 99 | F | L | -0.5094 | |
| 100 | A | L | 0.0000 | |
| 101 | T | L | -1.0654 | |
| 102 | Y | L | 0.0000 | |
| 103 | Y | L | 0.0000 | |
| 104 | C | L | 0.0000 | |
| 105 | Q | L | 0.0000 | |
| 106 | Q | L | 0.0000 | |
| 107 | S | L | 0.0000 | |
| 108 | Y | L | 0.9782 | |
| 109 | S | L | 0.1378 | |
| 114 | A | L | 0.0786 | |
| 115 | P | L | -0.4768 | |
| 116 | R | L | 0.0000 | |
| 117 | T | L | -0.6675 | |
| 118 | F | L | -0.4462 | |
| 119 | G | L | 0.0000 | |
| 120 | Q | L | -1.7256 | |
| 121 | G | L | 0.0000 | |
| 122 | T | L | 0.0000 | |
| 123 | K | L | -1.6286 | |
| 124 | V | L | 0.0000 | |
| 125 | E | L | -1.0625 | |
| 126 | I | L | 0.6975 | |
| 127 | K | L | -0.8352 |