| Chain sequence(s) |
H: QVQLQQPGAELVKPGASVKLSCKASGYTFTNYWIHWVKQRPGRGLEWIGRIIPNSGDTNYNERFKIKAILTAAKSSSTAYIQLNNLTSEDSAVYFCARPDYWGQGTTLTVSS
L: DIQMTQSPSSLSASLGERVSFTCRASQEISNYLSWVQQKPNGTIKRLINAAAILDSGVPKRFSGSRSGSDYSLTISSLESEDFADYYCLQYANYPWTFGGGTKLEIK input PDB |
| Selected Chain(s) | H,L |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:16)
[INFO] Main: Simulation completed successfully. (00:01:17)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | H | -1.5070 | |
| 2 | V | H | -1.0115 | |
| 3 | Q | H | -1.8527 | |
| 4 | L | H | 0.0000 | |
| 5 | Q | H | -2.1253 | |
| 6 | Q | H | 0.0000 | |
| 7 | P | H | -1.0152 | |
| 8 | G | H | -0.9716 | |
| 9 | A | H | -0.1481 | |
| 11 | E | H | -0.2334 | |
| 12 | L | H | 0.8622 | |
| 13 | V | H | -0.2259 | |
| 14 | K | H | -1.7512 | |
| 15 | P | H | -1.5390 | |
| 16 | G | H | -1.4930 | |
| 17 | A | H | -1.2502 | |
| 18 | S | H | -1.3968 | |
| 19 | V | H | 0.0000 | |
| 20 | K | H | -1.3737 | |
| 21 | L | H | 0.0000 | |
| 22 | S | H | -0.7265 | |
| 23 | C | H | 0.0000 | |
| 24 | K | H | -1.4668 | |
| 25 | A | H | 0.0000 | |
| 26 | S | H | -1.2470 | |
| 27 | G | H | -1.0273 | |
| 28 | Y | H | -0.5103 | |
| 29 | T | H | -0.3456 | |
| 30 | F | H | 0.0000 | |
| 35 | T | H | -1.2120 | |
| 36 | N | H | -1.1030 | |
| 37 | Y | H | 0.0416 | |
| 38 | W | H | 0.0268 | |
| 39 | I | H | 0.0000 | |
| 40 | H | H | 0.0000 | |
| 41 | W | H | 0.0000 | |
| 42 | V | H | 0.0000 | |
| 43 | K | H | 0.0000 | |
| 44 | Q | H | -1.0542 | |
| 45 | R | H | -1.7578 | |
| 46 | P | H | -1.3037 | |
| 47 | G | H | -1.6835 | |
| 48 | R | H | -2.6325 | |
| 49 | G | H | -1.7154 | |
| 50 | L | H | 0.0000 | |
| 51 | E | H | -1.1961 | |
| 52 | W | H | 0.0000 | |
| 53 | I | H | 0.0000 | |
| 54 | G | H | 0.0000 | |
| 55 | R | H | -0.4366 | |
| 56 | I | H | 0.0000 | |
| 57 | I | H | -0.7754 | |
| 58 | P | H | 0.0000 | |
| 59 | N | H | -2.0980 | |
| 62 | S | H | -1.6514 | |
| 63 | G | H | -1.8261 | |
| 64 | D | H | -2.2242 | |
| 65 | T | H | -0.9010 | |
| 66 | N | H | -1.0396 | |
| 67 | Y | H | -0.7881 | |
| 68 | N | H | 0.0000 | |
| 69 | E | H | -3.0664 | |
| 70 | R | H | -2.8376 | |
| 71 | F | H | 0.0000 | |
| 72 | K | H | -1.6273 | |
| 74 | I | H | 0.8011 | |
| 75 | K | H | -0.2925 | |
| 76 | A | H | 0.0000 | |
| 77 | I | H | 1.2316 | |
| 78 | L | H | 0.0000 | |
| 79 | T | H | -0.2195 | |
| 80 | A | H | -0.8925 | |
| 81 | A | H | -1.0778 | |
| 82 | K | H | -2.0576 | |
| 83 | S | H | -1.0242 | |
| 84 | S | H | -0.8400 | |
| 85 | S | H | -0.9394 | |
| 86 | T | H | 0.0000 | |
| 87 | A | H | 0.0000 | |
| 88 | Y | H | -0.0328 | |
| 89 | I | H | 0.0000 | |
| 90 | Q | H | -0.4336 | |
| 91 | L | H | 0.0000 | |
| 92 | N | H | -0.7740 | |
| 93 | N | H | -1.8800 | |
| 94 | L | H | 0.0000 | |
| 95 | T | H | -1.4672 | |
| 96 | S | H | -1.3160 | |
| 97 | E | H | -1.9120 | |
| 98 | D | H | 0.0000 | |
| 99 | S | H | -0.6532 | |
| 100 | A | H | 0.0000 | |
| 101 | V | H | -0.0595 | |
| 102 | Y | H | 0.0000 | |
| 103 | F | H | 0.0000 | |
| 104 | C | H | 0.0000 | |
| 105 | A | H | 0.0000 | |
| 106 | R | H | 0.0000 | |
| 107 | P | H | 0.0644 | |
| 116 | D | H | -0.2225 | |
| 117 | Y | H | 0.3844 | |
| 118 | W | H | -0.2325 | |
| 119 | G | H | 0.0000 | |
| 120 | Q | H | -1.6418 | |
| 121 | G | H | 0.0000 | |
| 122 | T | H | 0.0000 | |
| 123 | T | H | -0.1384 | |
| 124 | L | H | 0.0000 | |
| 125 | T | H | -0.1029 | |
| 126 | V | H | 0.0000 | |
| 127 | S | H | -0.6301 | |
| 128 | S | H | -0.7843 | |
| 1 | D | L | -2.3926 | |
| 2 | I | L | -1.8566 | |
| 3 | Q | L | -2.1460 | |
| 4 | M | L | 0.0000 | |
| 5 | T | L | -1.2959 | |
| 6 | Q | L | -1.0650 | |
| 7 | S | L | -0.7256 | |
| 8 | P | L | -0.5830 | |
| 9 | S | L | -0.8865 | |
| 10 | S | L | -0.9314 | |
| 11 | L | L | -0.3424 | |
| 12 | S | L | -0.3824 | |
| 13 | A | L | 0.0000 | |
| 14 | S | L | -0.5047 | |
| 15 | L | L | -0.1213 | |
| 16 | G | L | -1.1730 | |
| 17 | E | L | -1.7754 | |
| 18 | R | L | -2.3130 | |
| 19 | V | L | 0.0000 | |
| 20 | S | L | -0.6619 | |
| 21 | F | L | 0.0000 | |
| 22 | T | L | -0.8529 | |
| 23 | C | L | 0.0000 | |
| 24 | R | L | -2.8582 | |
| 25 | A | L | 0.0000 | |
| 26 | S | L | -2.1982 | |
| 27 | Q | L | -2.7969 | |
| 28 | E | L | -2.7392 | |
| 29 | I | L | 0.0000 | |
| 36 | S | L | -0.8008 | |
| 37 | N | L | -0.5791 | |
| 38 | Y | L | 0.5088 | |
| 39 | L | L | 0.0000 | |
| 40 | S | L | 0.0000 | |
| 41 | W | L | 0.0000 | |
| 42 | V | L | 0.0000 | |
| 43 | Q | L | 0.0000 | |
| 44 | Q | L | 0.0000 | |
| 45 | K | L | -1.4197 | |
| 46 | P | L | -1.1727 | |
| 47 | N | L | -1.7072 | |
| 48 | G | L | -1.1868 | |
| 49 | T | L | -1.0752 | |
| 50 | I | L | -0.7216 | |
| 51 | K | L | -0.8565 | |
| 52 | R | L | -0.6739 | |
| 53 | L | L | 0.0000 | |
| 54 | I | L | 0.0000 | |
| 55 | N | L | 0.4700 | |
| 56 | A | L | 0.7210 | |
| 57 | A | L | 0.0000 | |
| 65 | A | L | 0.7696 | |
| 66 | I | L | 1.9640 | |
| 67 | L | L | 0.6322 | |
| 68 | D | L | -0.2958 | |
| 69 | S | L | -0.4696 | |
| 70 | G | L | -0.8300 | |
| 71 | V | L | 0.0000 | |
| 72 | P | L | -1.1318 | |
| 74 | K | L | -1.9506 | |
| 75 | R | L | -1.5414 | |
| 76 | F | L | 0.0000 | |
| 77 | S | L | -0.2545 | |
| 78 | G | L | 0.0470 | |
| 79 | S | L | -0.5469 | |
| 80 | R | L | -1.5349 | |
| 83 | S | L | -1.2130 | |
| 84 | G | L | -1.3807 | |
| 85 | S | L | -2.0037 | |
| 86 | D | L | -1.8608 | |
| 87 | Y | L | 0.0000 | |
| 88 | S | L | -0.7924 | |
| 89 | L | L | 0.0000 | |
| 90 | T | L | -0.6695 | |
| 91 | I | L | 0.0000 | |
| 92 | S | L | -1.6316 | |
| 93 | S | L | -1.4306 | |
| 94 | L | L | 0.0000 | |
| 95 | E | L | -1.8557 | |
| 96 | S | L | -1.1694 | |
| 97 | E | L | -2.1159 | |
| 98 | D | L | 0.0000 | |
| 99 | F | L | -0.6936 | |
| 100 | A | L | 0.0000 | |
| 101 | D | L | -1.4882 | |
| 102 | Y | L | 0.0000 | |
| 103 | Y | L | 0.0000 | |
| 104 | C | L | 0.0000 | |
| 105 | L | L | 0.0000 | |
| 106 | Q | L | 0.0000 | |
| 107 | Y | L | 0.3932 | |
| 108 | A | L | -0.2779 | |
| 109 | N | L | -0.8919 | |
| 114 | Y | L | -0.3874 | |
| 115 | P | L | -0.8961 | |
| 116 | W | L | -0.3028 | |
| 117 | T | L | -0.6153 | |
| 118 | F | L | -0.2514 | |
| 119 | G | L | 0.0000 | |
| 120 | G | L | -1.3075 | |
| 121 | G | L | -1.2888 | |
| 122 | T | L | 0.0000 | |
| 123 | K | L | -1.8792 | |
| 124 | L | L | 0.0000 | |
| 125 | E | L | -0.3452 | |
| 126 | I | L | 1.0911 | |
| 127 | K | L | -0.7558 |