| Chain sequence(s) |
A: KGHKGHG
C: KGHKGHG B: KGHKGHG D: KGHKGHG input PDB |
| Selected Chain(s) | A,C,B,D |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:41)
[INFO] Main: Simulation completed successfully. (00:00:42)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | K | A | -2.9432 | |
| 2 | G | A | -2.6537 | |
| 3 | H | A | -3.0629 | |
| 4 | K | A | -3.2670 | |
| 5 | G | A | -2.5933 | |
| 6 | H | A | -2.2770 | |
| 7 | G | A | -1.3592 | |
| 1 | K | B | -3.3472 | |
| 2 | G | B | -3.1415 | |
| 3 | H | B | -3.1115 | |
| 4 | K | B | -3.1396 | |
| 5 | G | B | -2.6433 | |
| 6 | H | B | -2.3255 | |
| 7 | G | B | -1.6033 | |
| 1 | K | C | -3.5619 | |
| 2 | G | C | -3.1500 | |
| 3 | H | C | -3.1623 | |
| 4 | K | C | -3.2741 | |
| 5 | G | C | -2.8179 | |
| 6 | H | C | -2.6674 | |
| 7 | G | C | -1.7064 | |
| 1 | K | D | -2.8071 | |
| 2 | G | D | -2.9522 | |
| 3 | H | D | -3.1484 | |
| 4 | K | D | -3.3338 | |
| 5 | G | D | -2.5137 | |
| 6 | H | D | -2.3624 | |
| 7 | G | D | -1.4962 |