Project name: KGHKGHK12

Status: done

Started: 2026-02-22 10:11:10
Settings
Chain sequence(s) A: KGHKGHK
C: KGHKGHK
B: KGHKGHK
E: KGHKGHK
D: KGHKGHK
G: KGHKGHK
F: KGHKGHK
I: KGHKGHK
H: KGHKGHK
K: KGHKGHK
J: KGHKGHK
L: KGHKGHK
input PDB
Selected Chain(s) A,C,B,E,D,G,F,I,H,K,J,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:05:28)
[INFO]       Main:     Simulation completed successfully.                                          (00:05:30)
Show buried residues

Minimal score value
-5.3487
Maximal score value
0.0
Average score
-3.4258
Total score value
-287.7704

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 K A -3.6951
2 G A -3.6678
3 H A -3.8412
4 K A -4.6582
5 G A -4.0219
6 H A -3.3582
7 K A -3.0731
1 K B -3.2291
2 G B 0.0000
3 H B -3.6236
4 K B -4.5889
5 G B 0.0000
6 H B -3.2650
7 K B -3.9782
1 K C -2.7406
2 G C -3.1764
3 H C -3.1708
4 K C -3.8503
5 G C -2.9705
6 H C -2.6054
7 K C -2.8041
1 K D -3.1777
2 G D -2.8830
3 H D -3.3981
4 K D -4.2756
5 G D -3.3291
6 H D -2.9044
7 K D -2.6877
1 K E -2.8560
2 G E -2.4799
3 H E -3.4521
4 K E -4.0469
5 G E -3.4249
6 H E -3.3291
7 K E -2.6715
1 K F -2.9835
2 G F -2.8477
3 H F -3.3771
4 K F -3.7955
5 G F -3.0367
6 H F -3.3091
7 K F -3.0954
1 K G -4.3206
2 G G -3.7077
3 H G -3.3919
4 K G -4.2287
5 G G -3.4716
6 H G -3.7894
7 K G -3.8551
1 K H -3.1304
2 G H -2.5058
3 H H -3.3952
4 K H -3.8404
5 G H -3.4780
6 H H -3.6883
7 K H -4.2341
1 K I -3.3447
2 G I -3.1778
3 H I -3.1116
4 K I -3.9986
5 G I -3.6349
6 H I -3.3375
7 K I -2.9027
1 K J -3.3239
2 G J -3.3961
3 H J -2.9898
4 K J -4.1124
5 G J -4.2141
6 H J -5.3399
7 K J -4.5702
1 K K -3.3610
2 G K -3.9849
3 H K -4.1863
4 K K -5.3487
5 G K 0.0000
6 H K -4.9548
7 K K -5.1939
1 K L -5.0462
2 G L 0.0000
3 H L -4.5145
4 K L -5.3430
5 G L -3.5716
6 H L -3.2633
7 K L -2.8314
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Laboratory of Theory of Biopolymers 2018