Project name: query_structure

Status: done

Started: 2026-03-17 00:19:10
Settings
Chain sequence(s) A: QVQLQESGGGLVQAGDSLRLSCAASGNAFILYGMAWYRQPPGKAREFVAGITWSGGNPHYAASVKGRFTISRDNAKNTVYLQMDSLKSDDTAVYYCAANPSPRGSHNDYWGQGTQVTVSS
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:09)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:09)
Show buried residues

Minimal score value
-2.759
Maximal score value
2.3005
Average score
-0.7564
Total score value
-90.7715

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q A -1.4245
2 V A -1.0940
3 Q A -1.7154
4 L A 0.0000
5 Q A -1.5965
6 E A 0.0000
7 S A -1.0298
8 G A -0.9895
9 G A -0.8141
10 G A -0.0313
11 L A 1.0548
12 V A -0.1721
13 Q A -1.5026
14 A A -1.8103
15 G A -1.7954
16 D A -1.8258
17 S A -1.6872
18 L A -1.2561
19 R A -2.1576
20 L A 0.0000
21 S A -0.8352
22 C A 0.0000
23 A A -1.1124
24 A A 0.0000
25 S A -1.3597
26 G A -1.2944
27 N A -0.8756
28 A A 0.1032
29 F A 0.0000
30 I A 1.7413
31 L A 2.3005
32 Y A 1.2391
33 G A 0.5495
34 M A 0.0000
35 A A 0.1166
36 W A 0.0000
37 Y A 0.2278
38 R A 0.0000
39 Q A -1.2833
40 P A 0.0000
41 P A -1.3102
42 G A -1.5417
43 K A -2.3626
44 A A -1.5965
45 R A -1.4163
46 E A -0.9117
47 F A 0.3954
48 V A 0.0000
49 A A 0.0000
50 G A -0.4231
51 I A 0.0000
52 T A -0.0592
53 W A 0.9989
54 S A 0.1293
55 G A -0.5773
56 G A -1.0045
57 N A -1.6568
58 P A -1.2992
59 H A -1.4053
60 Y A -0.8722
61 A A -0.4816
62 A A -0.6228
63 S A -0.8020
64 V A 0.0000
65 K A -2.1097
66 G A -1.5424
67 R A -1.5596
68 F A 0.0000
69 T A -0.9980
70 I A 0.0000
71 S A -0.5532
72 R A -0.9228
73 D A -1.6641
74 N A -1.7757
75 A A -1.3918
76 K A -2.3690
77 N A -1.6817
78 T A 0.0000
79 V A 0.0000
80 Y A -0.6254
81 L A 0.0000
82 Q A -1.2643
83 M A 0.0000
84 D A -1.8146
85 S A -1.6158
86 L A 0.0000
87 K A -2.7590
88 S A -2.0176
89 D A -2.4248
90 D A 0.0000
91 T A -0.9557
92 A A 0.0000
93 V A -0.5599
94 Y A 0.0000
95 Y A -0.3276
96 C A 0.0000
97 A A 0.0000
98 A A 0.0000
99 N A -0.8480
100 P A -0.6362
101 S A -1.2685
102 P A -1.2730
103 R A -2.4045
104 G A -2.0660
105 S A -1.9397
106 H A -2.1283
107 N A -2.0360
108 D A -1.2706
109 Y A -0.4216
110 W A -0.1234
111 G A -0.8071
112 Q A -1.4065
113 G A -0.9449
114 T A 0.0000
115 Q A -1.0473
116 V A 0.0000
117 T A -0.3115
118 V A 0.0000
119 S A -0.8556
120 S A -0.9007
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Laboratory of Theory of Biopolymers 2018