Project name: 61bb0a8d2db2b3a

Status: done

Started: 2025-06-03 05:21:40
Settings
Chain sequence(s) H: QVQLVQSGPELKKPGASVKVSCKASGYTFTDYVIHWVKQATGQGLEWIGEIYPGSGSAYSNAKFKDRVTMTADKSSNTAYMELSSLTSDDTAVYFCARRGNGTGFAYWGQGTLVTVSS
L: DIVLTQSPASLAVSLGQRATITCKAGQSVDYDGDSYMNWYQQKPGQPPKLLIYVASNLESGIPARFSGSGSGTDFTLNIHPVEENDAATYYCQQSYKDPLTFGQGTKLEIK
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:59)
[INFO]       Main:     Simulation completed successfully.                                          (00:02:00)
Show buried residues

Minimal score value
-3.2021
Maximal score value
0.8033
Average score
-0.6523
Total score value
-149.3787

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q H -1.4152
2 V H -0.7031
3 Q H -1.3195
4 L H 0.0000
5 V H 0.0613
6 Q H 0.0000
7 S H -0.6110
8 G H -0.6845
9 P H -0.2245
11 E H -0.1921
12 L H 0.6766
13 K H -0.7816
14 K H -1.9037
15 P H -1.3008
16 G H -1.1566
17 A H -0.8234
18 S H -1.0813
19 V H 0.0000
20 K H -1.6581
21 V H 0.0000
22 S H -0.4816
23 C H 0.0000
24 K H -1.0519
25 A H 0.0000
26 S H -0.9614
27 G H -0.9733
28 Y H -0.6055
29 T H -0.6263
30 F H 0.0000
35 T H -1.0009
36 D H -1.4005
37 Y H -0.4660
38 V H 0.0292
39 I H 0.0000
40 H H 0.0000
41 W H 0.0000
42 V H 0.0000
43 K H 0.0000
44 Q H -0.5185
45 A H -0.8497
46 T H -0.5892
47 G H -1.1591
48 Q H -1.8053
49 G H -1.3257
50 L H 0.0000
51 E H -0.7766
52 W H 0.0000
53 I H 0.0000
54 G H 0.0000
55 E H 0.0000
56 I H 0.0000
57 Y H 0.4191
58 P H 0.0000
59 G H -0.8146
62 S H -0.5995
63 G H -0.4606
64 S H 0.1776
65 A H 0.6952
66 Y H 0.8033
67 S H -0.8524
68 N H -1.7478
69 A H -2.0756
70 K H -2.5871
71 F H 0.0000
72 K H -3.0617
74 D H -3.2021
75 R H -2.2669
76 V H 0.0000
77 T H -0.8486
78 M H 0.0403
79 T H -0.1968
80 A H -0.7245
81 D H -1.4043
82 K H -1.6066
83 S H -1.0065
84 S H -1.0223
85 N H -1.3221
86 T H 0.0000
87 A H 0.0000
88 Y H -0.4444
89 M H 0.0000
90 E H -1.0834
91 L H 0.0000
92 S H -1.0608
93 S H -1.0118
94 L H 0.0000
95 T H -1.2843
96 S H -1.4796
97 D H -1.9104
98 D H 0.0000
99 T H -0.4614
100 A H 0.0000
101 V H 0.2993
102 Y H 0.0000
103 F H 0.0000
104 C H 0.0000
105 A H 0.0000
106 R H 0.0000
107 R H -0.3904
108 G H 0.0000
109 N H -1.4754
110 G H -0.6282
113 T H -0.4567
114 G H 0.0000
115 F H 0.0000
116 A H 0.0000
117 Y H 0.1208
118 W H -0.2214
119 G H 0.0000
120 Q H -1.2668
121 G H -0.5707
122 T H 0.0000
123 L H 0.3981
124 V H 0.0000
125 T H -0.0916
126 V H 0.0000
127 S H -0.6791
128 S H -0.8413
1 D L -2.1276
2 I L 0.0000
3 V L 0.6866
4 L L 0.0000
5 T L -0.4190
6 Q L 0.0000
7 S L -0.4555
8 P L -0.3351
9 A L -0.5943
10 S L -0.8813
11 L L -0.6412
12 A L -0.9537
13 V L 0.0000
14 S L -1.7783
15 L L -1.3436
16 G L -1.8885
17 Q L -2.6839
18 R L -2.9662
19 A L 0.0000
20 T L -0.7451
21 I L 0.0000
22 T L -0.6217
23 C L 0.0000
24 K L -1.4886
25 A L 0.0000
26 G L -1.0893
27 Q L -1.7324
28 S L -1.0537
29 V L 0.0000
30 D L -0.8332
31 Y L -0.1734
34 D L -1.7745
35 G L -1.4948
36 D L -1.3109
37 S L 0.0000
38 Y L 0.0633
39 M L 0.0000
40 N L 0.0000
41 W L 0.0000
42 Y L 0.0000
43 Q L -0.7934
44 Q L -1.0889
45 K L -1.3591
46 P L -1.0391
47 G L -1.2978
48 Q L -1.8546
49 P L -1.1981
50 P L 0.0000
51 K L -0.8863
52 L L 0.0000
53 L L 0.0000
54 I L 0.0000
55 Y L 0.2802
56 V L -0.1731
57 A L 0.0000
65 S L -0.5419
66 N L -0.4032
67 L L 0.2324
68 E L 0.0000
69 S L -0.3073
70 G L -0.3883
71 I L -0.0992
72 P L -0.1380
74 A L -0.1998
75 R L -1.0075
76 F L 0.0000
77 S L -0.5442
78 G L -0.4249
79 S L -0.8177
80 G L -1.0318
83 S L -1.2083
84 G L -1.1477
85 T L -1.6377
86 D L -1.9975
87 F L 0.0000
88 T L -0.7261
89 L L 0.0000
90 N L -1.1318
91 I L 0.0000
92 H L -2.4941
93 P L -2.1056
94 V L 0.0000
95 E L -2.5039
96 E L -3.1325
97 N L -2.4623
98 D L 0.0000
99 A L -1.7444
100 A L 0.0000
101 T L -1.1464
102 Y L 0.0000
103 Y L 0.0000
104 C L 0.0000
105 Q L 0.0000
106 Q L 0.0000
107 S L 0.0000
108 Y L -0.2780
109 K L -1.9500
114 D L -2.4625
115 P L -1.9583
116 L L 0.0000
117 T L -0.5390
118 F L 0.0740
119 G L 0.0000
120 Q L -1.2194
121 G L 0.0000
122 T L 0.0000
123 K L -1.7451
124 L L 0.0000
125 E L -2.2055
126 I L -1.9408
127 K L -2.1145
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018