Project name: query_structure

Status: done

Started: 2026-03-16 21:43:15
Settings
Chain sequence(s) A: MLPAPKNLVVSRVTEDSARLSWTAPDAAFDSFNIAYWEPGAGGEAIWLRVPGSERSYDLTGLKPGTEYKVWIHGVKGGASSPPLIARFTT
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:35)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:37)
Show buried residues

Minimal score value
-3.0754
Maximal score value
1.6503
Average score
-0.7729
Total score value
-69.5626

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 M A 1.0683
2 L A 0.4060
3 P A -0.2001
4 A A -0.4956
5 P A 0.0000
6 K A -2.0372
7 N A -1.1699
8 L A 0.3102
9 V A 1.0098
10 V A 0.0402
11 S A -0.6085
12 R A -2.0038
13 V A -1.0109
14 T A -1.7952
15 E A -3.0689
16 D A -2.7757
17 S A -2.0895
18 A A 0.0000
19 R A -1.2094
20 L A 0.0000
21 S A -0.3821
22 W A 0.0000
23 T A -1.2901
24 A A -1.4214
25 P A -1.4102
26 D A -2.2791
27 A A -1.4754
28 A A -1.2067
29 F A 0.0000
30 D A -2.5064
31 S A 0.0000
32 F A 0.0000
33 N A -0.6042
34 I A 0.0000
35 A A 0.0000
36 Y A 0.5101
37 W A -0.5320
38 E A -1.5884
39 P A -1.3272
40 G A -1.0145
41 A A -0.9420
42 G A -1.0956
43 G A -1.1529
44 E A -1.5553
45 A A -0.1080
46 I A 1.0832
47 W A 1.1373
48 L A 0.1409
49 R A -1.5808
50 V A 0.0000
51 P A -1.5358
52 G A 0.0000
53 S A -1.6291
54 E A -1.5367
55 R A -1.1646
56 S A -0.6776
57 Y A -0.7575
58 D A -1.6616
59 L A 0.0000
60 T A -1.4418
61 G A -1.5130
62 L A 0.0000
63 K A -3.0754
64 P A -2.6537
65 G A -1.9460
66 T A -2.1022
67 E A -2.5571
68 Y A 0.0000
69 K A -0.9729
70 V A 0.0000
71 W A 1.0402
72 I A 0.0000
73 H A -0.2182
74 G A 0.0000
75 V A -1.3552
76 K A -1.8644
77 G A -1.4885
78 G A -1.1853
79 A A -0.6210
80 S A -0.3356
81 S A 0.0000
82 P A 0.2489
83 P A 0.2651
84 L A 0.8736
85 I A 1.6503
86 A A 0.3093
87 R A -1.6460
88 F A 0.0000
89 T A -1.7742
90 T A -2.0056
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018