Project name: 629d18a9b988d54

Status: done

Started: 2026-05-21 15:51:09
Settings
Chain sequence(s) A: FQFGHGFQF
C: FQFGHGFQF
B: FQFGHGFQF
E: FQFGHGFQF
D: FQFGHGFQF
G: FQFGHGFQF
F: FQFGHGFQF
H: FQFGHGFQF
input PDB
Selected Chain(s) A,C,B,E,D,G,F,H
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:45)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:46)
Show buried residues

Minimal score value
-0.8629
Maximal score value
3.6781
Average score
1.4238
Total score value
102.514

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 F A 2.9659
2 Q A 2.0330
3 F A 2.3813
4 G A 0.3704
5 H A -0.8267
6 G A 0.1094
7 F A 1.9717
8 Q A 2.0427
9 F A 2.7680
1 F B 3.5448
2 Q B 0.0000
3 F B 2.2337
4 G B 0.3380
5 H B -0.7156
6 G B -0.1327
7 F B 1.5962
8 Q B 2.4486
9 F B 3.1670
1 F C 3.0647
2 Q C 0.0000
3 F C 2.2995
4 G C 0.3074
5 H C -0.7435
6 G C 0.0000
7 F C 1.5368
8 Q C 2.3499
9 F C 2.9411
1 F D 3.6781
2 Q D 0.0000
3 F D 2.6513
4 G D 0.6578
5 H D -0.5228
6 G D 0.0000
7 F D 1.4351
8 Q D 2.4484
9 F D 2.9596
1 F E 3.4446
2 Q E 0.0000
3 F E 2.4557
4 G E 0.4464
5 H E -0.5675
6 G E 0.0000
7 F E 1.4118
8 Q E 2.3987
9 F E 2.8702
1 F F 3.0679
2 Q F 0.0000
3 F F 2.2186
4 G F 0.1639
5 H F -0.8629
6 G F -0.3379
7 F F 1.4463
8 Q F 2.2664
9 F F 2.8716
1 F G 3.1775
2 Q G 0.0000
3 F G 2.3660
4 G G 0.2816
5 H G -0.7712
6 G G 0.0377
7 F G 1.6667
8 Q G 2.5799
9 F G 3.0317
1 F H 3.0188
2 Q H 2.2919
3 F H 2.5117
4 G H 0.6127
5 H H -0.6299
6 G H 0.2838
7 F H 2.2222
8 Q H 2.2447
9 F H 2.9353
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018