| Chain sequence(s) |
A: QVQLVESGGGLVQAGGSLRLSCAASGSTFSRYALAWYRQTPGKQREWVATITSGGVTSYVDSVKGRFTVSRDNAANTVYLQMISLKPEDTAVYYCKAPEILSPWGQGTQVTVSSGGGGSGGGGSGGGGSQVQLVESGGGLVQPGGSLRLSCAASGFTRDAYAIGWFRQAPGKEREGVSCISASGSRTNYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAIYYCAATEFGTGYVCYGGLEGNEFSFWGQGTQVTVSS
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:03:52)
[INFO] Main: Simulation completed successfully. (00:03:54)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | A | -1.1710 | |
| 2 | V | A | -0.2171 | |
| 3 | Q | A | -0.6199 | |
| 4 | L | A | 0.0000 | |
| 5 | V | A | 0.0638 | |
| 6 | E | A | 0.0000 | |
| 7 | S | A | -0.5958 | |
| 8 | G | A | -0.9510 | |
| 9 | G | A | -0.6537 | |
| 10 | G | A | -0.3584 | |
| 11 | L | A | -0.0279 | |
| 12 | V | A | -0.5236 | |
| 13 | Q | A | -1.6096 | |
| 14 | A | A | -1.5303 | |
| 15 | G | A | -1.0090 | |
| 16 | G | A | -0.5765 | |
| 17 | S | A | -0.5504 | |
| 18 | L | A | -0.7451 | |
| 19 | R | A | -1.9251 | |
| 20 | L | A | 0.0000 | |
| 21 | S | A | -0.5358 | |
| 22 | C | A | 0.0000 | |
| 23 | A | A | -0.1604 | |
| 24 | A | A | -0.2725 | |
| 25 | S | A | -0.5439 | |
| 26 | G | A | -0.6835 | |
| 27 | S | A | -0.8010 | |
| 28 | T | A | -0.7815 | |
| 29 | F | A | 0.0000 | |
| 30 | S | A | -1.5875 | |
| 31 | R | A | -2.2319 | |
| 32 | Y | A | -1.1710 | |
| 33 | A | A | -0.6437 | |
| 34 | L | A | 0.0000 | |
| 35 | A | A | 0.0000 | |
| 36 | W | A | 0.0000 | |
| 37 | Y | A | -0.3825 | |
| 38 | R | A | -1.0539 | |
| 39 | Q | A | -1.6814 | |
| 40 | T | A | -1.7953 | |
| 41 | P | A | -1.3011 | |
| 42 | G | A | -1.7960 | |
| 43 | K | A | -3.0073 | |
| 44 | Q | A | -2.8019 | |
| 45 | R | A | -2.1861 | |
| 46 | E | A | -1.8588 | |
| 47 | W | A | -0.4347 | |
| 48 | V | A | 0.0000 | |
| 49 | A | A | 0.0000 | |
| 50 | T | A | 0.2497 | |
| 51 | I | A | 0.0000 | |
| 52 | T | A | -0.0436 | |
| 53 | S | A | -0.9113 | |
| 54 | G | A | -0.5208 | |
| 55 | G | A | 0.0806 | |
| 56 | V | A | 1.3736 | |
| 57 | T | A | 0.5736 | |
| 58 | S | A | -0.1127 | |
| 59 | Y | A | -0.7995 | |
| 60 | V | A | -1.1330 | |
| 61 | D | A | -2.3377 | |
| 62 | S | A | -1.6838 | |
| 63 | V | A | 0.0000 | |
| 64 | K | A | -2.5622 | |
| 65 | G | A | -1.5351 | |
| 66 | R | A | -0.9190 | |
| 67 | F | A | 0.0000 | |
| 68 | T | A | -0.7195 | |
| 69 | V | A | 0.0000 | |
| 70 | S | A | -0.4153 | |
| 71 | R | A | -1.1061 | |
| 72 | D | A | -1.5354 | |
| 73 | N | A | -1.8345 | |
| 74 | A | A | -0.7973 | |
| 75 | A | A | -0.7286 | |
| 76 | N | A | -1.2923 | |
| 77 | T | A | -0.7184 | |
| 78 | V | A | 0.0000 | |
| 79 | Y | A | -0.6338 | |
| 80 | L | A | 0.0000 | |
| 81 | Q | A | -1.0552 | |
| 82 | M | A | 0.0000 | |
| 83 | I | A | 0.0968 | |
| 84 | S | A | -0.3532 | |
| 85 | L | A | 0.0000 | |
| 86 | K | A | -1.8377 | |
| 87 | P | A | -1.7695 | |
| 88 | E | A | -2.2241 | |
| 89 | D | A | 0.0000 | |
| 90 | T | A | -0.8685 | |
| 91 | A | A | 0.0000 | |
| 92 | V | A | -0.1536 | |
| 93 | Y | A | 0.0000 | |
| 94 | Y | A | -0.1606 | |
| 95 | C | A | 0.0000 | |
| 96 | K | A | -0.0547 | |
| 97 | A | A | 0.0000 | |
| 98 | P | A | -0.6565 | |
| 99 | E | A | -1.5663 | |
| 100 | I | A | 0.1592 | |
| 101 | L | A | 1.2890 | |
| 102 | S | A | 0.0000 | |
| 103 | P | A | 0.1621 | |
| 104 | W | A | 0.3490 | |
| 105 | G | A | 0.0000 | |
| 106 | Q | A | -0.7526 | |
| 107 | G | A | 0.0000 | |
| 108 | T | A | 0.0000 | |
| 109 | Q | A | -0.5659 | |
| 110 | V | A | 0.0000 | |
| 111 | T | A | -0.5782 | |
| 112 | V | A | 0.0000 | |
| 113 | S | A | -1.1094 | |
| 114 | S | A | -1.3791 | |
| 115 | G | A | -1.3642 | |
| 116 | G | A | -1.2543 | |
| 117 | G | A | -1.1833 | |
| 118 | G | A | -1.1770 | |
| 119 | S | A | -1.0422 | |
| 120 | G | A | -1.1285 | |
| 121 | G | A | -1.1510 | |
| 122 | G | A | -1.1522 | |
| 123 | G | A | -1.1417 | |
| 124 | S | A | -0.9319 | |
| 125 | G | A | -1.1298 | |
| 126 | G | A | -1.1534 | |
| 127 | G | A | -1.2612 | |
| 128 | G | A | -1.2280 | |
| 129 | S | A | -1.1939 | |
| 130 | Q | A | -1.4688 | |
| 131 | V | A | -0.4477 | |
| 132 | Q | A | -0.5797 | |
| 133 | L | A | 0.0000 | |
| 134 | V | A | -0.0495 | |
| 135 | E | A | 0.0000 | |
| 136 | S | A | -0.5321 | |
| 137 | G | A | -1.0074 | |
| 138 | G | A | -0.5522 | |
| 139 | G | A | -0.2706 | |
| 140 | L | A | 0.1605 | |
| 141 | V | A | -0.3657 | |
| 142 | Q | A | -1.3365 | |
| 143 | P | A | -1.5540 | |
| 144 | G | A | -1.3293 | |
| 145 | G | A | -0.9469 | |
| 146 | S | A | -1.1277 | |
| 147 | L | A | -0.9997 | |
| 148 | R | A | -2.0840 | |
| 149 | L | A | 0.0000 | |
| 150 | S | A | -0.5718 | |
| 151 | C | A | 0.0000 | |
| 152 | A | A | -0.4506 | |
| 153 | A | A | 0.0000 | |
| 154 | S | A | -0.9190 | |
| 155 | G | A | -0.8876 | |
| 156 | F | A | -1.1485 | |
| 157 | T | A | -1.4100 | |
| 158 | R | A | -2.9912 | |
| 159 | D | A | -2.7241 | |
| 160 | A | A | -1.3220 | |
| 161 | Y | A | 0.0000 | |
| 162 | A | A | 0.0000 | |
| 163 | I | A | 0.0000 | |
| 164 | G | A | 0.0000 | |
| 165 | W | A | 0.0000 | |
| 166 | F | A | 0.0000 | |
| 167 | R | A | 0.0000 | |
| 168 | Q | A | -1.9730 | |
| 169 | A | A | -1.9072 | |
| 170 | P | A | -1.3975 | |
| 171 | G | A | -1.9701 | |
| 172 | K | A | -3.3928 | |
| 173 | E | A | -3.7060 | |
| 174 | R | A | -3.3092 | |
| 175 | E | A | -2.7445 | |
| 176 | G | A | -1.6929 | |
| 177 | V | A | 0.0000 | |
| 178 | S | A | 0.0000 | |
| 179 | C | A | 0.0000 | |
| 180 | I | A | 0.0000 | |
| 181 | S | A | -0.7083 | |
| 182 | A | A | -1.2363 | |
| 183 | S | A | -1.0219 | |
| 184 | G | A | -1.4316 | |
| 185 | S | A | -1.3364 | |
| 186 | R | A | -1.9242 | |
| 187 | T | A | -0.9248 | |
| 188 | N | A | -0.8276 | |
| 189 | Y | A | -1.0529 | |
| 190 | A | A | -1.5805 | |
| 191 | D | A | -2.5241 | |
| 192 | S | A | -1.8492 | |
| 193 | V | A | 0.0000 | |
| 194 | K | A | -2.6801 | |
| 195 | G | A | -1.7766 | |
| 196 | R | A | -1.4743 | |
| 197 | F | A | 0.0000 | |
| 198 | T | A | -0.9007 | |
| 199 | I | A | 0.0000 | |
| 200 | S | A | -0.7160 | |
| 201 | R | A | -1.0422 | |
| 202 | D | A | -1.5085 | |
| 203 | N | A | -2.1836 | |
| 204 | A | A | -1.7122 | |
| 205 | K | A | -2.3567 | |
| 206 | N | A | -2.0682 | |
| 207 | T | A | -1.0418 | |
| 208 | V | A | 0.0000 | |
| 209 | Y | A | -0.6606 | |
| 210 | L | A | 0.0000 | |
| 211 | Q | A | -1.2850 | |
| 212 | M | A | 0.0000 | |
| 213 | N | A | -1.3915 | |
| 214 | S | A | -1.1958 | |
| 215 | L | A | 0.0000 | |
| 216 | K | A | -2.2451 | |
| 217 | P | A | -1.8581 | |
| 218 | E | A | -2.3226 | |
| 219 | D | A | 0.0000 | |
| 220 | T | A | -0.8319 | |
| 221 | A | A | 0.0000 | |
| 222 | I | A | -0.1062 | |
| 223 | Y | A | 0.0000 | |
| 224 | Y | A | -0.3106 | |
| 225 | C | A | 0.0000 | |
| 226 | A | A | 0.0000 | |
| 227 | A | A | 0.0000 | |
| 228 | T | A | 0.0000 | |
| 229 | E | A | -1.2060 | |
| 230 | F | A | 0.7210 | |
| 231 | G | A | -0.0552 | |
| 232 | T | A | -0.0285 | |
| 233 | G | A | 0.5051 | |
| 234 | Y | A | 1.6020 | |
| 235 | V | A | 0.0000 | |
| 236 | C | A | 0.1259 | |
| 237 | Y | A | 1.1401 | |
| 238 | G | A | 0.1195 | |
| 239 | G | A | -0.5703 | |
| 240 | L | A | -1.2638 | |
| 241 | E | A | -2.7947 | |
| 242 | G | A | -2.1606 | |
| 243 | N | A | -2.1951 | |
| 244 | E | A | -1.7595 | |
| 245 | F | A | 0.0000 | |
| 246 | S | A | -0.4254 | |
| 247 | F | A | 0.4688 | |
| 248 | W | A | 0.3714 | |
| 249 | G | A | -0.2517 | |
| 250 | Q | A | -1.0687 | |
| 251 | G | A | 0.0000 | |
| 252 | T | A | 0.0000 | |
| 253 | Q | A | -0.2858 | |
| 254 | V | A | 0.0000 | |
| 255 | T | A | -0.4933 | |
| 256 | V | A | 0.0000 | |
| 257 | S | A | -0.8876 | |
| 258 | S | A | -0.6218 |