Project name: test2

Status: done

Started: 2025-06-27 22:59:18
Settings
Chain sequence(s) H: EVQLLESGGGLVQPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAILGATSLSAFDIWGQGTMVTVSS
L: EIVLTQSPGTLSLSPGERATLSCRASQSVSSSYLAWYQQKPGQAPRLLIYGASSRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQYGSSPLTFGQGTKVEIK
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage No
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       runJob:   FoldX not utilized. Treating input pdb file as it was already optimized.    (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:01)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:03)
Show buried residues

Minimal score value
-3.3825
Maximal score value
1.2605
Average score
-0.6061
Total score value
-138.1858

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 E H -1.8036
2 V H -0.6110
3 Q H -0.9599
4 L H 0.0000
5 L H 0.6125
6 E H 0.0000
7 S H -0.2990
8 G H -0.6309
9 G H -0.0367
10 G H 0.4782
11 L H 1.2605
12 V H -0.1072
13 Q H -1.4481
14 P H -1.8522
15 G H -1.5794
16 G H -1.0838
17 S H -1.0866
18 L H -0.5127
19 R H -1.1692
20 L H 0.0000
21 S H -0.1873
22 C H 0.0000
23 A H -0.1697
24 A H 0.0000
25 S H -0.6609
26 G H -0.9424
27 F H -0.3316
28 T H -0.1554
29 F H 0.0000
30 S H -0.5869
31 S H -0.2427
32 Y H 0.1257
33 A H 0.0167
34 M H 0.0000
35 S H 0.0000
36 W H 0.0000
37 V H 0.0000
38 R H 0.0000
39 Q H -0.7450
40 A H -1.1274
41 P H -0.9170
42 G H -1.4552
43 K H -2.3914
44 G H -1.5752
45 L H 0.0000
46 E H -1.0216
47 W H 0.0000
48 V H 0.0000
49 S H 0.0000
50 A H 0.0000
51 I H 0.0000
52 S H -0.1777
52A G H -0.4472
53 S H -0.6799
54 G H -0.7330
55 G H -0.6847
56 S H -0.1712
57 T H 0.3799
58 Y H 0.7290
59 Y H -0.3884
60 A H -1.2014
61 D H -2.4003
62 S H -1.7922
63 V H 0.0000
64 K H -2.4526
65 G H -1.7396
66 R H -1.4581
67 F H 0.0000
68 T H -0.5765
69 I H 0.0000
70 S H -0.3871
71 R H -0.9914
72 D H -1.5168
73 N H -1.7293
74 S H -1.5760
75 K H -2.3388
76 N H -1.6892
77 T H -0.9880
78 L H 0.0000
79 Y H -0.2741
80 L H 0.0000
81 Q H -0.7627
82 M H 0.0000
82A N H -1.2139
82B S H -1.3555
82C L H 0.0000
83 R H -2.8222
84 A H -1.9670
85 E H -2.4211
86 D H 0.0000
87 T H -0.6123
88 A H 0.0000
89 V H 0.3953
90 Y H 0.0000
91 Y H 0.0000
92 C H 0.0000
93 A H 0.0000
94 I H 0.0000
95 L H 0.1521
96 G H -0.0400
97 A H -0.0069
98 T H -0.0325
99 S H -0.0243
100 L H 0.1458
100A S H 0.0222
100B A H 0.0000
100C F H 0.0000
101 D H -0.5381
102 I H 0.0112
103 W H -0.3018
104 G H 0.0000
105 Q H -1.3124
106 G H -0.4247
107 T H 0.0679
108 M H 0.6897
109 V H 0.0000
110 T H 0.0685
111 V H 0.0000
112 S H -0.8234
113 S H -0.5644
1 E L -1.6159
2 I L 0.0000
3 V L 0.6268
4 L L 0.0000
5 T L -0.7859
6 Q L 0.0000
7 S L -0.8891
8 P L -0.5014
9 G L -0.8344
10 T L -0.5123
11 L L -0.3908
12 S L -0.5192
13 L L -1.0900
14 S L -1.5365
15 P L -1.6982
16 G L -1.9536
17 E L -2.5552
18 R L -3.0858
19 A L 0.0000
20 T L -0.8091
21 L L 0.0000
22 S L -0.9012
23 C L 0.0000
24 R L -2.3417
25 A L 0.0000
26 S L -1.0597
27 Q L -1.7556
28 S L -1.4205
29 V L 0.0000
30 S L -0.5437
30A S L -0.5233
31 S L -0.1217
32 Y L 0.1899
33 L L 0.0000
34 A L 0.0000
35 W L 0.0000
36 Y L 0.0000
37 Q L -0.6144
38 Q L -0.8697
39 K L -1.2173
40 P L -0.8723
41 G L -1.4328
42 Q L -2.0841
43 A L -1.3334
44 P L 0.0000
45 R L -1.5488
46 L L 0.0000
47 L L 0.0000
48 I L 0.0000
49 Y L -0.0418
50 G L -0.1485
51 A L 0.0000
52 S L -0.6180
53 S L -0.6233
54 R L -1.3373
55 A L -0.8246
56 T L -0.6016
57 G L -0.9014
58 I L 0.0000
59 P L -1.3808
60 D L -2.4413
61 R L -2.0468
62 F L 0.0000
63 S L -0.9001
64 G L -0.4894
65 S L -0.6763
66 G L -1.1167
67 S L -1.0501
68 G L -1.2024
69 T L -1.7808
70 D L -2.1539
71 F L 0.0000
72 T L -0.7652
73 L L 0.0000
74 T L 0.0000
75 I L 0.0000
76 S L -2.4064
77 R L -3.3825
78 L L 0.0000
79 E L -1.7531
80 P L -1.4967
81 E L -1.7229
82 D L 0.0000
83 F L -0.1739
84 A L 0.0000
85 V L -0.0161
86 Y L 0.0000
87 Y L 0.0000
88 C L 0.0000
89 Q L 0.0000
90 Q L 0.0000
91 Y L 0.0000
92 G L -0.4333
93 S L -0.6844
94 S L -0.5035
95 P L -0.7417
96 L L -0.0631
97 T L -0.1377
98 F L 0.0658
99 G L 0.0000
100 Q L -1.3950
101 G L 0.0000
102 T L 0.0000
103 K L -0.4562
104 V L 0.0000
105 E L -0.5626
106 I L -0.8494
107 K L -1.6204
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Laboratory of Theory of Biopolymers 2018