Project name: 1A4

Status: done

Started: 2025-08-15 03:31:20
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Chain sequence(s) H: SVKESGGRLVTPGTPLTLTCTVSGFSLSGFAMGWVRQAPGKGLEYIGLISAYDDTFYASWAKGRFTISKTSTTVDLKIVSPTTEDTATYFCARYGPYGGNSYDTWGPGTLVTVSS
L: AAVLTQTPASVSAAVGDTVTINCQSSPSVTSNYLSWFQQKPGQPPKLLIYDASDLASGVPSRFSGSGSGTQFTLTISGVQSDDAATYYCLGEYDSTTDAFGGGTNVEIK
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:26)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:27)
Show buried residues

Minimal score value
-2.2798
Maximal score value
1.5342
Average score
-0.4036
Total score value
-90.4033

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
3 S H -0.6971
4 V H 0.0000
5 K H -1.4857
6 E H 0.0000
7 S H -0.6698
8 G H -0.5359
9 G H -0.1903
11 R H -0.4219
12 L H 0.6068
13 V H 0.0000
14 T H -0.3022
15 P H -0.6749
16 G H -0.5786
17 T H -0.3367
18 P H -0.2884
19 L H 0.0000
20 T H -0.4724
21 L H 0.0000
22 T H -0.6632
23 C H 0.0000
24 T H -0.5961
25 V H -0.4557
26 S H -0.5916
27 G H -0.4881
28 F H -0.1283
29 S H -0.2783
30 L H 0.0000
35 S H -0.3370
36 G H -0.0973
37 F H 0.4302
38 A H 0.0000
39 M H 0.0000
40 G H 0.0000
41 W H 0.0000
42 V H 0.0000
43 R H 0.0000
44 Q H -0.8314
45 A H -1.1210
46 P H -0.9098
47 G H -1.4865
48 K H -2.2798
49 G H -1.4396
50 L H 0.0000
51 E H -0.9150
52 Y H 0.0000
53 I H 0.0000
54 G H 0.0000
55 L H 0.0000
56 I H 0.0000
57 S H 0.0000
58 A H -0.2671
59 Y H -0.0940
63 D H -2.0913
64 D H -2.1909
65 T H -0.9894
66 F H -0.4350
67 Y H -0.2583
68 A H -0.3306
69 S H -0.5052
70 W H -0.3905
71 A H 0.0000
72 K H -1.9140
74 G H -1.3071
75 R H -0.9229
76 F H 0.0000
77 T H -0.6332
78 I H 0.0000
79 S H -1.0576
80 K H -0.9226
81 T H -0.4574
84 S H -0.4131
85 T H -0.2908
86 T H -0.4752
87 V H 0.0000
88 D H -0.7163
89 L H 0.0000
90 K H -0.7011
91 I H 0.0000
92 V H 0.1997
93 S H -0.2495
94 P H 0.0000
95 T H -0.8269
96 T H -1.1046
97 E H -1.8867
98 D H 0.0000
99 T H -0.4075
100 A H 0.0000
101 T H 0.4670
102 Y H 0.0000
103 F H 0.0000
104 C H 0.0000
105 A H 0.0000
106 R H -0.2450
107 Y H 0.0896
108 G H 0.0000
109 P H 0.4586
110 Y H 1.0663
111 G H 0.0000
112 G H 0.0000
113 N H 0.0000
114 S H 0.0000
115 Y H 0.0000
116 D H -1.0014
117 T H -0.7332
118 W H -0.7902
119 G H 0.0000
120 P H -0.7767
121 G H -0.3871
122 T H 0.0923
123 L H 1.1930
124 V H 0.0000
125 T H 0.1384
126 V H 0.0000
127 S H -0.0772
128 S H -0.1629
1 A L 0.3851
2 A L 0.7850
3 V L 1.5342
4 L L 0.0000
5 T L -0.1791
6 Q L -0.4068
7 T L -0.5127
8 P L -0.2878
9 A L -0.3486
10 S L -0.6127
11 V L -0.2984
12 S L -0.8270
13 A L 0.0000
14 A L -0.5742
15 V L 0.6319
16 G L -0.5531
17 D L -1.1530
18 T L -0.6404
19 V L 0.0000
20 T L -0.1532
21 I L 0.0000
22 N L -0.7494
23 C L 0.0000
24 Q L -0.9304
25 S L 0.0000
26 S L -0.0042
27 P L -0.1674
28 S L -0.6161
29 V L 0.0000
30 T L -0.6468
36 S L -0.6389
37 N L -0.7527
38 Y L -0.0782
39 L L 0.0000
40 S L 0.0000
41 W L 0.0000
42 F L 0.0000
43 Q L 0.0000
44 Q L -1.1351
45 K L -1.5365
46 P L -1.1429
47 G L -1.3442
48 Q L -1.9103
49 P L -1.2337
50 P L 0.0000
51 K L -1.4549
52 L L 0.0000
53 L L 0.0000
54 I L 0.0000
55 Y L -0.2261
56 D L -0.5934
57 A L 0.0000
65 S L -1.0672
66 D L -1.4187
67 L L -0.4247
68 A L -0.5320
69 S L -0.5336
70 G L -0.4659
71 V L -0.3030
72 P L -0.3660
74 S L -0.4652
75 R L -0.7545
76 F L 0.0000
77 S L -0.5905
78 G L -0.5807
79 S L -0.8024
80 G L -0.9340
83 S L -0.7907
84 G L -0.7630
85 T L -0.8737
86 Q L -1.2375
87 F L 0.0000
88 T L -0.6180
89 L L 0.0000
90 T L -0.3085
91 I L 0.0000
92 S L -0.6970
93 G L -0.7020
94 V L 0.0000
95 Q L -1.0339
96 S L -1.3043
97 D L -2.0781
98 D L 0.0000
99 A L -1.2769
100 A L 0.0000
101 T L -0.7585
102 Y L 0.0000
103 Y L 0.0000
104 C L 0.0000
105 L L 0.0000
106 G L 0.0000
107 E L 0.0000
108 Y L 0.0000
109 D L -1.8270
113 S L -0.9207
114 T L -0.5050
115 T L -0.2221
116 D L 0.0000
117 A L 0.3573
118 F L 0.1792
119 G L 0.0000
120 G L -0.6411
121 G L -0.7443
122 T L 0.0000
123 N L -1.0814
124 V L 0.0000
125 E L -1.7789
126 I L -1.0774
127 K L -1.5462
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Laboratory of Theory of Biopolymers 2018