Project name: comprehensive_iter1_improved

Status: done

Started: 2025-12-31 01:02:08
Settings
Chain sequence(s) A: GIVEQCCTSICSLDQLEDYCNDKDHELCGSHLVEALYLVCGDRGFFYTPKK
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:51)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:52)
Show buried residues

Minimal score value
-4.0009
Maximal score value
2.7663
Average score
-1.0604
Total score value
-54.0798

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 G A -1.0482
2 I A -0.9332
3 V A 0.0000
4 E A -1.9726
5 Q A -1.1559
6 C A 0.0000
7 C A -0.3316
8 T A -0.3294
9 S A 0.8631
10 I A 2.7663
11 C A 0.0000
12 S A -0.3403
13 L A -1.4985
14 D A -2.7405
15 Q A -2.1809
16 L A -1.6451
17 E A -3.2098
18 D A -3.5607
19 Y A -2.7517
20 C A -2.8547
21 N A -3.6385
22 D A -4.0009
23 K A -3.8682
24 D A -3.7804
25 H A -3.2077
26 E A -2.9357
27 L A -1.3772
28 C A -1.0730
29 G A -0.9089
30 S A -0.9360
31 H A -1.5101
32 L A 0.0000
33 V A 0.1774
34 E A -0.8453
35 A A 0.0814
36 L A 0.0000
37 Y A 1.1157
38 L A 1.7403
39 V A 0.6567
40 C A 0.0000
41 G A -0.8215
42 D A -2.4537
43 R A -2.3660
44 G A -0.6108
45 F A 1.1194
46 F A 2.7574
47 Y A 1.9235
48 T A 0.1786
49 P A -1.2511
50 K A -2.7441
51 K A -2.5774
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Laboratory of Theory of Biopolymers 2018